General information for g10690.t13
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Probable dolichol-phosphate mannosyltransferase.
Parent gene
- The parent gene g10690 is located on chr_1: 11336998..11339776 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10690 | g10690.t13 | TTS | g10690.t13 | 11336191 | 11336191 |
| chr_1 | g10690 | g10690.t13 | isoform | g10690.t13 | 11336225 | 11336846 |
| chr_1 | g10690 | g10690.t13 | exon | g10690.t13.exon1 | 11336225 | 11336846 |
| chr_1 | g10690 | g10690.t13 | cds | g10690.t13.CDS1 | 11336225 | 11336692 |
| chr_1 | g10690 | g10690.t13 | TSS | g10690.t13 | 11337083 | 11337083 |
Sequences
>g10690.t13 Gene=g10690 Length=622
CAAAATAAATTATGAAATAATCATAATTGATGATGGAAGTCCTGATGGAACACAAGATGT
GGCAAAAGAACTAATTAAAATTTATGGAGATGATAAAATTTTACTTAGACCAAGAGAAAA
GAAATTAGGATTGGGAACAGCTTACGTTCATGGAATGAGCCATGCAAGTGGAAATTTTAT
TATCATTATGGATGCCGATTTGAGTCATCATCCGAAATTCATTCCAAAATTTATTGAACT
TCAAAAGAAGCATGATTATGATATTGTGTCTGGAACGCGATATAAAGGTGAAGGTGGTGT
TTATGGCTGGGATTTTAAGAGAAAACTCATTTCAAGAGGCGCAAACTTTTTATCACAATT
TCTTTTAAGACCAAATGCAAGTGATTTGACAGGTTCATTTCGATTGTATAAAAAAGATGT
TCTTACAAAGTTGATTGCAGCATGTGAGTCAAAAGGCTATGTTTTTCAAATGGAAATGAT
TGTACGCGCAAGAGCTCTTAAATTTACAATTGGTGAAGTCCCAATAACATTTGTCGATCG
AGTTTACGGTGATAGCAAAATGGGAGCAACTGAAATAATTCAATTTGCTAAAAATCTTTT
GTATTTCTTTGCAACTATTTAA
>g10690.t13 Gene=g10690 Length=155
MSHASGNFIIIMDADLSHHPKFIPKFIELQKKHDYDIVSGTRYKGEGGVYGWDFKRKLIS
RGANFLSQFLLRPNASDLTGSFRLYKKDVLTKLIAACESKGYVFQMEMIVRARALKFTIG
EVPITFVDRVYGDSKMGATEIIQFAKNLLYFFATI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g10690.t13 | CDD | cd06442 | DPM1_like | 1 | 151 | 0 |
| 4 | g10690.t13 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 1 | 149 | 0 |
| 2 | g10690.t13 | PANTHER | PTHR43398 | DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE SUBUNIT 1 | 1 | 154 | 0 |
| 1 | g10690.t13 | Pfam | PF00535 | Glycosyl transferase family 2 | 2 | 92 | 0 |
| 3 | g10690.t13 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 1 | 152 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004582 | dolichyl-phosphate beta-D-mannosyltransferase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K00721 (dolichol-phosphate mannosyltransferase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
