General information for g10691.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as AP-2 complex subunit mu.
Parent gene
- The parent gene g10691 is located on chr_1: 11338501..11339776 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10691 | g10691.t2 | TSS | g10691.t2 | 11337279 | 11337279 |
| chr_1 | g10691 | g10691.t2 | isoform | g10691.t2 | 11337370 | 11338187 |
| chr_1 | g10691 | g10691.t2 | exon | g10691.t2.exon1 | 11337370 | 11337386 |
| chr_1 | g10691 | g10691.t2 | exon | g10691.t2.exon2 | 11337640 | 11337876 |
| chr_1 | g10691 | g10691.t2 | cds | g10691.t2.CDS1 | 11337700 | 11337876 |
| chr_1 | g10691 | g10691.t2 | exon | g10691.t2.exon3 | 11337943 | 11338187 |
| chr_1 | g10691 | g10691.t2 | cds | g10691.t2.CDS2 | 11337943 | 11338125 |
| chr_1 | g10691 | g10691.t2 | TTS | g10691.t2 | NA | NA |
Sequences
>g10691.t2 Gene=g10691 Length=499
TAAAAACAATTTTACAAAAATATCTTTTCCGGAAATTCGCAGAGCGAAAGAGAGGAAGGG
AAATTTAAAGAGTAAGGATGATTGGTGGATTATTCGTTTACAATCACAAAGGTGAAGTTC
TAATATCTCGTGTTTATCGCGATGATATTGGAAGAAATGCTGTTGACGCTTTTAGAGTAA
ATGTCATTCATGCTCGTCAACAAGTTAGATCACCCGTGACAAACATCGCAAGAACAAGTT
TTTTTCACATAAAAAGAGCGAATATTTGGTTGGCTGCTGTAACCAAACAAAATGTAAATG
CTGCAATGGTTTTCGAATTTTTATTGAAAATCATTGATGTCATGCAATCTTACTTTGGAA
AAATTTCCGAAGAAAATATTAAAAATAATTTTGTCCTTATTTATGAACTTTTGGACGGTA
AAATGATTATAATTTAATTATTCTCTATATATAATTTATTAAATGTGTTTATAGAAATTC
TTGATTTTGGTTACCCACA
>g10691.t2 Gene=g10691 Length=119
MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKR
ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDGKMIII
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g10691.t2 | CDD | cd14836 | AP2_Mu_N | 1 | 113 | 0 |
| 6 | g10691.t2 | Gene3D | G3DSA:3.30.450.60 | - | 1 | 117 | 0 |
| 1 | g10691.t2 | PANTHER | PTHR10529 | AP COMPLEX SUBUNIT MU | 1 | 114 | 0 |
| 2 | g10691.t2 | PANTHER | PTHR10529:SF236 | AP-2 COMPLEX SUBUNIT MU | 1 | 114 | 0 |
| 4 | g10691.t2 | PRINTS | PR00314 | Clathrin coat assembly protein signature | 12 | 32 | 0 |
| 3 | g10691.t2 | PRINTS | PR00314 | Clathrin coat assembly protein signature | 98 | 119 | 0 |
| 5 | g10691.t2 | SUPERFAMILY | SSF64356 | SNARE-like | 1 | 113 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006886 | intracellular protein transport | BP |
| GO:0030131 | clathrin adaptor complex | CC |
| GO:0016192 | vesicle-mediated transport | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
