Gene loci information

Transcript annotation

  • This transcript has been annotated as AP-2 complex subunit mu.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10691 g10691.t7 TSS g10691.t7 11337279 11337279
chr_1 g10691 g10691.t7 isoform g10691.t7 11337700 11338501
chr_1 g10691 g10691.t7 exon g10691.t7.exon1 11337700 11338105
chr_1 g10691 g10691.t7 cds g10691.t7.CDS1 11337919 11338105
chr_1 g10691 g10691.t7 exon g10691.t7.exon2 11338163 11338438
chr_1 g10691 g10691.t7 cds g10691.t7.CDS2 11338163 11338438
chr_1 g10691 g10691.t7 exon g10691.t7.exon3 11338495 11338501
chr_1 g10691 g10691.t7 cds g10691.t7.CDS3 11338495 11338499
chr_1 g10691 g10691.t7 TTS g10691.t7 NA NA

Sequences

>g10691.t7 Gene=g10691 Length=689
ATGATTGGTGGATTATTCGTTTACAATCACAAAGGTGAAGTTCTAATATCTCGTGTTTAT
CGCGATGATATTGGAAGAAATGCTGTTGACGCTTTTAGAGTAAATGTCATTCATGCTCGT
CAACAAGTTAGATCACCCGTGACAAACATCGCAAGAACAAGTTTTTTTCACATAAAAGTA
AGTAATCGATATTTTTATTCAACATAATTTTATTGATAAATGTATTGTAATTATCTTTTA
CAGAGAGCGAATATTTGGTTGGCTGCTGTAACCAAACAAAATGTAAATGCTGCAATGGTT
TTCGAATTTTTATTGAAAATCATTGATGTCATGCAATCTTACTTTGGAAAAATTTCCGAA
GAAAATATTAAAAATAATTTTGTCCTTATTTATGAACTTTTGGACGAAATTCTTGATTTT
GGTTACCCACAAAATTCTGATACTGGAGTTTTAAAGACATTTATAACGCAACAAGGTATT
AAATCAGCAACAAAAGAAGAGCAGGCGCAAATAACATCTCAAGTCACTGGTCAAATTGGT
TGGCGTAGAGAAGGAATTAAATACAGACGCAATGAACTATTTTTGGATGTTTTGGAATAT
GTTAATTTGCTCATGAGTCCCCAAGGACAAGTATTATCAGCTCATGTCGCTGGGAAAGTT
GTTATGAAATCATTTTTATCAGGTATGCC

>g10691.t7 Gene=g10691 Length=156
MYCNYLLQRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYEL
LDEILDFGYPQNSDTGVLKTFITQQGIKSATKEEQAQITSQVTGQIGWRREGIKYRRNEL
FLDVLEYVNLLMSPQGQVLSAHVAGKVVMKSFLSGM

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g10691.t7 Gene3D G3DSA:3.30.450.60 - 2 90 9.5E-35
11 g10691.t7 Gene3D G3DSA:2.60.40.1170 - 106 156 1.5E-18
3 g10691.t7 PANTHER PTHR10529 AP COMPLEX SUBUNIT MU 8 156 2.0E-64
4 g10691.t7 PANTHER PTHR10529:SF236 AP-2 COMPLEX SUBUNIT MU 8 156 2.0E-64
5 g10691.t7 PRINTS PR00314 Clathrin coat assembly protein signature 47 74 1.5E-26
6 g10691.t7 PRINTS PR00314 Clathrin coat assembly protein signature 108 136 1.5E-26
2 g10691.t7 Pfam PF01217 Clathrin adaptor complex small chain 10 75 6.0E-5
1 g10691.t7 Pfam PF00928 Adaptor complexes medium subunit family 107 156 1.2E-14
9 g10691.t7 ProSitePatterns PS00990 Clathrin adaptor complexes medium chain signature 1. 106 126 -
12 g10691.t7 ProSiteProfiles PS51072 Mu homology domain (MHD) profile. 117 156 10.775
7 g10691.t7 SUPERFAMILY SSF64356 SNARE-like 7 88 1.69E-26
8 g10691.t7 SUPERFAMILY SSF49447 Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 106 156 4.58E-16

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006886 intracellular protein transport BP
GO:0030131 clathrin adaptor complex CC
GO:0016192 vesicle-mediated transport BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed