General information for g10746.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Cancer-related nucleoside-triphosphatase-like protein.
Parent gene
- The parent gene g10746 is located on chr_1: 11683293..11685138 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10746 | g10746.t1 | isoform | g10746.t1 | 11682718 | 11683293 |
| chr_1 | g10746 | g10746.t1 | exon | g10746.t1.exon1 | 11682718 | 11683293 |
| chr_1 | g10746 | g10746.t1 | cds | g10746.t1.CDS1 | 11682718 | 11683293 |
| chr_1 | g10746 | g10746.t1 | TSS | g10746.t1 | NA | NA |
| chr_1 | g10746 | g10746.t1 | TTS | g10746.t1 | NA | NA |
Sequences
>g10746.t1 Gene=g10746 Length=576
ATGCCGAATTCATTTATAATTTTAACAGGAATGCCTGGAAGTGGTAAATCAACAATCATA
AAGCGAATTGTGAATGAATTAAGAGCAAACACGATGACCAATTTAAAAGGTTTTTATACC
GAAGAATGTCGAAATGAAGCAAATGAAAGAATTGGATTCGATATAAAAACATTTGATGGC
AAAGAGGGAATTTTAGCAAGAACATCAACAGAAATAAATAGTAAGAATAAACCAACAAAC
ATGAATTACAAAGTCGGAAAATATGTAGTATATGTAAATGAATTTGAAAACCTATGCATG
AAATATTTCGATATATCTGAAGAGAAAGATTTACTGGTTATCGATGAGATTGGTAAAATG
GAATTATTCAGCAAGAAATTTGAAAAGGCTATCAATAATTTATTGAGTACAAAAAGTAAT
CTTAAAATTTTAGCAACAGTTCCTCTTAAAAATTCACATCTTCTTGTTGAACAAATCAAG
AGCGACAAAAATTCAACACTTTTCCATATCACAAAATCTAATCGTGACGATCTGTATGCT
GAAATTTTGAATAAAGTCAAAGAAATGATAAAATAA
>g10746.t1 Gene=g10746 Length=191
MPNSFIILTGMPGSGKSTIIKRIVNELRANTMTNLKGFYTEECRNEANERIGFDIKTFDG
KEGILARTSTEINSKNKPTNMNYKVGKYVVYVNEFENLCMKYFDISEEKDLLVIDEIGKM
ELFSKKFEKAINNLLSTKSNLKILATVPLKNSHLLVEQIKSDKNSTLFHITKSNRDDLYA
EILNKVKEMIK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g10746.t1 | Gene3D | G3DSA:3.40.50.300 | - | 4 | 191 | 0.0000 |
| 2 | g10746.t1 | PANTHER | PTHR43146 | CANCER-RELATED NUCLEOSIDE-TRIPHOSPHATASE | 6 | 191 | 0.0000 |
| 1 | g10746.t1 | Pfam | PF03266 | NTPase | 6 | 183 | 0.0000 |
| 4 | g10746.t1 | SMART | SM00382 | AAA_5 | 2 | 166 | 0.0012 |
| 3 | g10746.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 4 | 185 | 0.0000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0017111 | nucleoside-triphosphatase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K06928 (nucleoside-triphosphatase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
