General information for g10747.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g10747 is located on chr_1: 11684816..11695188 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10747 | g10747.t4 | TTS | g10747.t4 | 11683292 | 11683292 |
| chr_1 | g10747 | g10747.t4 | isoform | g10747.t4 | 11683895 | 11684816 |
| chr_1 | g10747 | g10747.t4 | exon | g10747.t4.exon1 | 11683895 | 11684719 |
| chr_1 | g10747 | g10747.t4 | cds | g10747.t4.CDS1 | 11683896 | 11684483 |
| chr_1 | g10747 | g10747.t4 | exon | g10747.t4.exon2 | 11684784 | 11684816 |
| chr_1 | g10747 | g10747.t4 | TSS | g10747.t4 | 11684921 | 11684921 |
Sequences
>g10747.t4 Gene=g10747 Length=858
ATGATTGATAATGATGATCCAATTATTGATGAGATTCCAGTTTATCTTTCAAGTAATTTG
GCGAAAAATCTATACATTTTACAGTTTCCGGTGAATAACACATTTGATATCGATCAATCA
AAAATCTCGAATTGTTGTCTCAAACCTGAAAGTAAACAAGTAAGTTATTATCTTAACTTT
ATAACACAAATTATTTTCTGTATTTTTAGATCAAAATCGATTTTACACTTGATACTGCTT
CAAGAAATTATGATGCATTTAAAGGAGAAATGCTTGCAAAAACAGCTGATGGAAGTAAAT
CAACTAATGATAAAAACGATCTCCCAAGTTTCTCATCCGGCCGTATGGATAAATCTACTT
TTATAAGTTCATTACCATTTGATAACCAAAAGTTTGCTGTTGGTGTAATGCAAGACAAAC
AATTGCATTTAGTTCCAGTAAAAAATTTCTTTCAAATGAGACAAACATTTTCTCATTTTG
ATAAAGGTGATAAACGCATAAAATCGGAGAAAAGTGGAGATGATGATGACGATGATGATC
TGAAACAAGTAACAGTTAAATTTGCAAAACCAGCTGGAGATTCTGAAAGAATTAAAAAAG
CAAGAGAGAGGTCATATCAGTTTATTTCTTCAATCGGAAAAGATGAAGCTTGGTGTGAAA
CTTTAATATATTCAAAAATTTCACCAGAATCAGAATTGGAACGCCAAAAAATTCTTTATA
CTGGTGGACAACAACAGCATTTGAGTACAATACCAGTACAAGATTACTTTGAAACACTTA
TGACACCAGATAAAGGGTCAATTTCTCTTACATCACATGAACCGTCAAAATCAGATGATA
CTTCAGAAAAGCATATTG
>g10747.t4 Gene=g10747 Length=196
MLAKTADGSKSTNDKNDLPSFSSGRMDKSTFISSLPFDNQKFAVGVMQDKQLHLVPVKNF
FQMRQTFSHFDKGDKRIKSEKSGDDDDDDDLKQVTVKFAKPAGDSERIKKARERSYQFIS
SIGKDEAWCETLIYSKISPESELERQKILYTGGQQQHLSTIPVQDYFETLMTPDKGSISL
TSHEPSKSDDTSEKHI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g10747.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - |
| 3 | g10747.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 196 | - |
| 2 | g10747.t4 | PANTHER | PTHR12069 | DNA-DIRECTED RNA POLYMERASES III 80 KDA POLYPEPTIDE RNA POLYMERASE III SUBUNIT 5 | 14 | 177 | 1.1E-19 |
| 1 | g10747.t4 | Pfam | PF04801 | Sin-like protein conserved region | 5 | 181 | 2.2E-37 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005634 | nucleus | CC |
| GO:0006351 | transcription, DNA-templated | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
