Gene loci information

Transcript annotation

  • This transcript has been annotated as 14-3-3 protein zeta.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10748 g10748.t14 TSS g10748.t14 11685100 11685100
chr_1 g10748 g10748.t14 isoform g10748.t14 11685107 11694882
chr_1 g10748 g10748.t14 exon g10748.t14.exon1 11685107 11685188
chr_1 g10748 g10748.t14 exon g10748.t14.exon2 11691232 11691513
chr_1 g10748 g10748.t14 exon g10748.t14.exon3 11691725 11691838
chr_1 g10748 g10748.t14 exon g10748.t14.exon4 11691899 11692019
chr_1 g10748 g10748.t14 exon g10748.t14.exon5 11692178 11692309
chr_1 g10748 g10748.t14 cds g10748.t14.CDS1 11692252 11692309
chr_1 g10748 g10748.t14 exon g10748.t14.exon6 11693133 11693296
chr_1 g10748 g10748.t14 cds g10748.t14.CDS2 11693133 11693296
chr_1 g10748 g10748.t14 exon g10748.t14.exon7 11694727 11694882
chr_1 g10748 g10748.t14 cds g10748.t14.CDS3 11694727 11694882
chr_1 g10748 g10748.t14 TTS g10748.t14 11695497 11695497

Sequences

>g10748.t14 Gene=g10748 Length=1051
CGAAATTTTCTCAACTCGGATTAGTGACTCTGTAGATTTTCGTGCCATTATACAGATTTT
TACGCCTTTTCAAAAGTTAAAAGGTTTAGAGAAAGCGACTTCGACAGTTCCCAGGTCAGG
AATAAAAGAGAGTTTAGTCAACCACAGGAGTTTATAATCTTCCCATAAACCACACACCAT
ACACATTATATAGTCAAAACTCATCCCCAGATCCTAGAGTAATTTTTAAGAACTGTCTTC
ATTAAAATAAAGAACTACTTCTCGAATTTTAAAGGAAACACACATAAAAATCAGAAGCAA
ATATGTCAACCGTTGATAAAGAAGAACTTGTCCAGAAAGCAAAACTTGCTGAACAGTCTG
AAAGATATGATGATATGGCACAAGCCATGAAATCTGTCACAGAAACAGGCGTAGAGCTCT
CAAATGAAGAACGAAATTTACTGTCAGTTGCTTACAAAAATGTAGTCGGAGCCAGACGAT
CATCATGGCGTGTAATTTCATCAATTGAACAAAAAACCGAATCCTCAGCTCGAAAGCAAC
AGTTGGCCCGAGAATACAGAGAGCGTGTTGAAAAAGAGCTTAGGGAAATTTGTTATGAAT
TTTTTAGGGACTTTTGGATAAATTTTTAATTCCCAAAGCCAGTAATCCAGAAAGTAAAGT
CTTCTACTTGAAAATGAAAGGCGATTACTACAGATATTTAGCAGAAGTTGCTACCGGTGA
AACACGCAACTCTGTTGTTGAAGATTCCCAGAAAGCCTATCAAGACGCCTTCGATATTGC
AAAGAATGACATGCAGCCTACACATCCTATTCGTTTGGGTTTGGCATTAAATTTCTCTGT
GTTTTACTATGAAATTCTGAGTAGTCCAGAGAAAGCCTGCCAGCTAGCAAAACAGGCTTT
CGATGACGCTATCGCAGAATTGGACACACTAAATGAGGACTCATATAAAGATTCAACCCT
TATCATGCAGCTGTTGAGAGATAACCTTACTTTATGGACATCTGATACGCAAGGGGACGG
TGATGAAGCACCAGTTGGAGATGATAACTAA

>g10748.t14 Gene=g10748 Length=125
MKGDYYRYLAEVATGETRNSVVEDSQKAYQDAFDIAKNDMQPTHPIRLGLALNFSVFYYE
ILSSPEKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDEAP
VGDDN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g10748.t14 Coils Coil Coil 69 89 -
8 g10748.t14 Gene3D G3DSA:1.20.190.20 - 1 125 3.1E-63
2 g10748.t14 PANTHER PTHR18860 14-3-3 PROTEIN 1 122 5.8E-68
3 g10748.t14 PANTHER PTHR18860:SF7 14-3-3 PROTEIN ZETA/DELTA 1 122 5.8E-68
6 g10748.t14 PRINTS PR00305 14-3-3 protein zeta signature 28 54 1.0E-42
4 g10748.t14 PRINTS PR00305 14-3-3 protein zeta signature 55 81 1.0E-42
5 g10748.t14 PRINTS PR00305 14-3-3 protein zeta signature 82 111 1.0E-42
1 g10748.t14 Pfam PF00244 14-3-3 protein 1 109 6.7E-57
10 g10748.t14 ProSitePatterns PS00797 14-3-3 proteins signature 2. 91 110 -
11 g10748.t14 SMART SM00101 1433_4 1 122 3.0E-27
7 g10748.t14 SUPERFAMILY SSF48445 14-3-3 protein 1 117 7.85E-56

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values