General information for g10748.t17
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as 14-3-3 protein zeta.
Parent gene
- The parent gene g10748 is located on chr_1: 11694759..11696924 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10748 | g10748.t17 | TSS | g10748.t17 | 11685100 | 11685100 |
| chr_1 | g10748 | g10748.t17 | isoform | g10748.t17 | 11685107 | 11695188 |
| chr_1 | g10748 | g10748.t17 | exon | g10748.t17.exon1 | 11685107 | 11685188 |
| chr_1 | g10748 | g10748.t17 | exon | g10748.t17.exon2 | 11691232 | 11691367 |
| chr_1 | g10748 | g10748.t17 | exon | g10748.t17.exon3 | 11691424 | 11691513 |
| chr_1 | g10748 | g10748.t17 | cds | g10748.t17.CDS1 | 11691452 | 11691513 |
| chr_1 | g10748 | g10748.t17 | exon | g10748.t17.exon4 | 11691725 | 11691838 |
| chr_1 | g10748 | g10748.t17 | cds | g10748.t17.CDS2 | 11691725 | 11691838 |
| chr_1 | g10748 | g10748.t17 | exon | g10748.t17.exon5 | 11691899 | 11692025 |
| chr_1 | g10748 | g10748.t17 | cds | g10748.t17.CDS3 | 11691899 | 11692025 |
| chr_1 | g10748 | g10748.t17 | exon | g10748.t17.exon6 | 11692186 | 11692309 |
| chr_1 | g10748 | g10748.t17 | cds | g10748.t17.CDS4 | 11692186 | 11692309 |
| chr_1 | g10748 | g10748.t17 | exon | g10748.t17.exon7 | 11692597 | 11692760 |
| chr_1 | g10748 | g10748.t17 | cds | g10748.t17.CDS5 | 11692597 | 11692760 |
| chr_1 | g10748 | g10748.t17 | exon | g10748.t17.exon8 | 11694727 | 11695188 |
| chr_1 | g10748 | g10748.t17 | cds | g10748.t17.CDS6 | 11694727 | 11694882 |
| chr_1 | g10748 | g10748.t17 | TTS | g10748.t17 | 11695497 | 11695497 |
Sequences
>g10748.t17 Gene=g10748 Length=1299
CGAAATTTTCTCAACTCGGATTAGTGACTCTGTAGATTTTCGTGCCATTATACAGATTTT
TACGCCTTTTCAAAAGTTAAAAGGTTTAGAGAAAGCGACTTCGACAGTTCCCAGGTCAGG
AATAAAAGAGAGTTTAGTCAACCACAGGAGTTTATAATCTTCCCATAAACCACACACCAT
ACACATTATATAGTCAAAACTCATCCCCAGATCCTAGAGAAACACACATAAAAATCAGAA
GCAAATATGTCAACCGTTGATAAAGAAGAACTTGTCCAGAAAGCAAAACTTGCTGAACAG
TCTGAAAGATATGATGATATGGCACAAGCCATGAAATCTGTCACAGAAACAGGCGTAGAG
CTCTCAAATGAAGAACGAAATTTACTGTCAGTTGCTTACAAAAATGTAGTCGGAGCCAGA
CGATCATCATGGCGTGTAATTTCATCAATTGAACAAAAAACCGAATCCTCAGCTCGAAAG
CAACAGTTGGCCCGAGAATACAGAGAGCGTGTTGAAAAAGAGCTTAGGGAAATTTGTTAT
GAAGTGCTGGGACTTTTGGATAAATTTTTAATTCCCAAAGCCAGTAATCCAGAAAGTAAA
GTCTTCTACTTGAAAATGAAAGGCGATTACTACAGATATTTAGCAGAAGTTGCTACCGGT
GAAACACGCAACTCCGTAGTTGATGACTCACAAGCAGCATACCAAGATGCATTTGAGATT
AGTAAGGGCAAAATGCAACCAACACATCCAATACGTTTAGGCTTGGCATTAAACTTCTCC
GTCTTTTATTATGAGATACTCAGCTCTCCCGAGAAAGCATGCGCTTTGGCAAAGCAGGCT
TTCGATGACGCTATCGCAGAATTGGACACACTAAATGAGGACTCATATAAAGATTCAACC
CTTATCATGCAGCTGTTGAGAGATAACCTTACTTTATGGACATCTGATACGCAAGGGGAC
GGTGATGAAGCACCAGTTGGAGATGATAACTAACCAAACTAAATTATCACAAATTCGAGA
TGATAATGAAACAACTAAAACAAATTTAAATAAGATAATTTTGCGTCGCAGAGAGAAAAA
ATCGATTAATGCAGTTATATAAAATATATTTTTTTTCTTCGATTTAAATTGAGTCAACTG
AAGAAAAGATTCTTTTTTATTATATAAAACAAATACGCGCAGTTTTATAAGAGAAAGTTA
TTAAATGTATTCCTTATTATTTTTCTCTTGATTCATTTGTTCTTTTCTTAATTTATTATT
ATAATTGTCTTCAAAAGCGCTTTTATCAGGATAATAAAA
>g10748.t17 Gene=g10748 Length=248
MSTVDKEELVQKAKLAEQSERYDDMAQAMKSVTETGVELSNEERNLLSVAYKNVVGARRS
SWRVISSIEQKTESSARKQQLAREYRERVEKELREICYEVLGLLDKFLIPKASNPESKVF
YLKMKGDYYRYLAEVATGETRNSVVDDSQAAYQDAFEISKGKMQPTHPIRLGLALNFSVF
YYEILSSPEKACALAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGD
EAPVGDDN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 13 | g10748.t17 | Coils | Coil | Coil | 75 | 95 | - |
| 12 | g10748.t17 | Coils | Coil | Coil | 192 | 212 | - |
| 11 | g10748.t17 | Gene3D | G3DSA:1.20.190.20 | - | 1 | 247 | 5.8E-126 |
| 2 | g10748.t17 | PANTHER | PTHR18860 | 14-3-3 PROTEIN | 5 | 245 | 7.8E-138 |
| 3 | g10748.t17 | PANTHER | PTHR18860:SF7 | 14-3-3 PROTEIN ZETA/DELTA | 5 | 245 | 7.8E-138 |
| 14 | g10748.t17 | PIRSF | PIRSF000868 | 14-3-3 | 1 | 243 | 2.5E-117 |
| 6 | g10748.t17 | PRINTS | PR00305 | 14-3-3 protein zeta signature | 38 | 67 | 1.3E-84 |
| 8 | g10748.t17 | PRINTS | PR00305 | 14-3-3 protein zeta signature | 85 | 109 | 1.3E-84 |
| 5 | g10748.t17 | PRINTS | PR00305 | 14-3-3 protein zeta signature | 116 | 138 | 1.3E-84 |
| 4 | g10748.t17 | PRINTS | PR00305 | 14-3-3 protein zeta signature | 151 | 177 | 1.3E-84 |
| 9 | g10748.t17 | PRINTS | PR00305 | 14-3-3 protein zeta signature | 178 | 204 | 1.3E-84 |
| 7 | g10748.t17 | PRINTS | PR00305 | 14-3-3 protein zeta signature | 205 | 234 | 1.3E-84 |
| 1 | g10748.t17 | Pfam | PF00244 | 14-3-3 protein | 12 | 232 | 4.2E-107 |
| 15 | g10748.t17 | ProSitePatterns | PS00796 | 14-3-3 proteins signature 1. | 44 | 54 | - |
| 16 | g10748.t17 | ProSitePatterns | PS00797 | 14-3-3 proteins signature 2. | 214 | 233 | - |
| 17 | g10748.t17 | SMART | SM00101 | 1433_4 | 6 | 245 | 1.8E-146 |
| 10 | g10748.t17 | SUPERFAMILY | SSF48445 | 14-3-3 protein | 5 | 234 | 5.36E-104 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K16197 (14-3-3 protein beta/theta/zeta)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed