Gene loci information

Transcript annotation

  • This transcript has been annotated as 14-3-3 protein zeta.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10748 g10748.t2 TSS g10748.t2 11691231 11691231
chr_1 g10748 g10748.t2 isoform g10748.t2 11691452 11694882
chr_1 g10748 g10748.t2 exon g10748.t2.exon1 11691452 11691513
chr_1 g10748 g10748.t2 cds g10748.t2.CDS1 11691452 11691513
chr_1 g10748 g10748.t2 exon g10748.t2.exon2 11691725 11691838
chr_1 g10748 g10748.t2 cds g10748.t2.CDS2 11691725 11691838
chr_1 g10748 g10748.t2 exon g10748.t2.exon3 11691899 11692025
chr_1 g10748 g10748.t2 cds g10748.t2.CDS3 11691899 11692025
chr_1 g10748 g10748.t2 exon g10748.t2.exon4 11692186 11692309
chr_1 g10748 g10748.t2 cds g10748.t2.CDS4 11692186 11692309
chr_1 g10748 g10748.t2 exon g10748.t2.exon5 11692597 11692644
chr_1 g10748 g10748.t2 cds g10748.t2.CDS5 11692597 11692644
chr_1 g10748 g10748.t2 exon g10748.t2.exon6 11693133 11693296
chr_1 g10748 g10748.t2 cds g10748.t2.CDS6 11693133 11693296
chr_1 g10748 g10748.t2 exon g10748.t2.exon7 11694727 11694882
chr_1 g10748 g10748.t2 cds g10748.t2.CDS7 11694727 11694882
chr_1 g10748 g10748.t2 TTS g10748.t2 11695497 11695497

Sequences

>g10748.t2 Gene=g10748 Length=795
ATGTCAACCGTTGATAAAGAAGAACTTGTCCAGAAAGCAAAACTTGCTGAACAGTCTGAA
AGATATGATGATATGGCACAAGCCATGAAATCTGTCACAGAAACAGGCGTAGAGCTCTCA
AATGAAGAACGAAATTTACTGTCAGTTGCTTACAAAAATGTAGTCGGAGCCAGACGATCA
TCATGGCGTGTAATTTCATCAATTGAACAAAAAACCGAATCCTCAGCTCGAAAGCAACAG
TTGGCCCGAGAATACAGAGAGCGTGTTGAAAAAGAGCTTAGGGAAATTTGTTATGAAGTG
CTGGGACTTTTGGATAAATTTTTAATTCCCAAAGCCAGTAATCCAGAAAGTAAAGTCTTC
TACTTGAAAATGAAAGGCGATTACTACAGATATTTAGCAGAAGTTGCTACCGGTGAAACA
CGCAACTCCGTAGTTGATGACTCACAAGCAGCATACCAAGATGCATTTGAGATTACTGTT
GTTGAAGATTCCCAGAAAGCCTATCAAGACGCCTTCGATATTGCAAAGAATGACATGCAG
CCTACACATCCTATTCGTTTGGGTTTGGCATTAAATTTCTCTGTGTTTTACTATGAAATT
CTGAGTAGTCCAGAGAAAGCCTGCCAGCTAGCAAAACAGGCTTTCGATGACGCTATCGCA
GAATTGGACACACTAAATGAGGACTCATATAAAGATTCAACCCTTATCATGCAGCTGTTG
AGAGATAACCTTACTTTATGGACATCTGATACGCAAGGGGACGGTGATGAAGCACCAGTT
GGAGATGATAACTAA

>g10748.t2 Gene=g10748 Length=264
MSTVDKEELVQKAKLAEQSERYDDMAQAMKSVTETGVELSNEERNLLSVAYKNVVGARRS
SWRVISSIEQKTESSARKQQLAREYRERVEKELREICYEVLGLLDKFLIPKASNPESKVF
YLKMKGDYYRYLAEVATGETRNSVVDDSQAAYQDAFEITVVEDSQKAYQDAFDIAKNDMQ
PTHPIRLGLALNFSVFYYEILSSPEKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLL
RDNLTLWTSDTQGDGDEAPVGDDN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g10748.t2 Coils Coil Coil 75 95 -
13 g10748.t2 Coils Coil Coil 208 228 -
12 g10748.t2 Gene3D G3DSA:1.20.190.20 - 1 159 1.1E-73
11 g10748.t2 Gene3D G3DSA:1.20.190.20 - 160 264 3.0E-50
3 g10748.t2 PANTHER PTHR18860 14-3-3 PROTEIN 5 159 7.4E-138
5 g10748.t2 PANTHER PTHR18860:SF7 14-3-3 PROTEIN ZETA/DELTA 5 159 7.4E-138
4 g10748.t2 PANTHER PTHR18860 14-3-3 PROTEIN 160 261 7.4E-138
6 g10748.t2 PANTHER PTHR18860:SF7 14-3-3 PROTEIN ZETA/DELTA 160 261 7.4E-138
16 g10748.t2 PIRSF PIRSF000868 14-3-3 1 162 4.1E-68
15 g10748.t2 PIRSF PIRSF000868 14-3-3 158 259 6.4E-49
8 g10748.t2 PRINTS PR00305 14-3-3 protein zeta signature 38 67 9.7E-43
7 g10748.t2 PRINTS PR00305 14-3-3 protein zeta signature 194 220 9.7E-43
9 g10748.t2 PRINTS PR00305 14-3-3 protein zeta signature 221 250 9.7E-43
1 g10748.t2 Pfam PF00244 14-3-3 protein 12 158 8.4E-62
2 g10748.t2 Pfam PF00244 14-3-3 protein 160 248 2.2E-44
17 g10748.t2 ProSitePatterns PS00796 14-3-3 proteins signature 1. 44 54 -
18 g10748.t2 ProSitePatterns PS00797 14-3-3 proteins signature 2. 230 249 -
19 g10748.t2 SMART SM00101 1433_4 6 261 8.2E-142
10 g10748.t2 SUPERFAMILY SSF48445 14-3-3 protein 5 239 2.39E-92

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed