General information for g10748.t24
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as 14-3-3 protein zeta.
Parent gene
- The parent gene g10748 is located on chr_1: 11694759..11696924 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10748 | g10748.t24 | TSS | g10748.t24 | 11685100 | 11685100 |
| chr_1 | g10748 | g10748.t24 | isoform | g10748.t24 | 11685107 | 11695188 |
| chr_1 | g10748 | g10748.t24 | exon | g10748.t24.exon1 | 11685107 | 11685188 |
| chr_1 | g10748 | g10748.t24 | exon | g10748.t24.exon2 | 11691232 | 11691513 |
| chr_1 | g10748 | g10748.t24 | cds | g10748.t24.CDS1 | 11691452 | 11691513 |
| chr_1 | g10748 | g10748.t24 | exon | g10748.t24.exon3 | 11691725 | 11691838 |
| chr_1 | g10748 | g10748.t24 | cds | g10748.t24.CDS2 | 11691725 | 11691838 |
| chr_1 | g10748 | g10748.t24 | exon | g10748.t24.exon4 | 11691899 | 11692019 |
| chr_1 | g10748 | g10748.t24 | cds | g10748.t24.CDS3 | 11691899 | 11692019 |
| chr_1 | g10748 | g10748.t24 | exon | g10748.t24.exon5 | 11692186 | 11692309 |
| chr_1 | g10748 | g10748.t24 | cds | g10748.t24.CDS4 | 11692186 | 11692309 |
| chr_1 | g10748 | g10748.t24 | exon | g10748.t24.exon6 | 11693133 | 11693296 |
| chr_1 | g10748 | g10748.t24 | cds | g10748.t24.CDS5 | 11693133 | 11693296 |
| chr_1 | g10748 | g10748.t24 | exon | g10748.t24.exon7 | 11694727 | 11695188 |
| chr_1 | g10748 | g10748.t24 | cds | g10748.t24.CDS6 | 11694727 | 11694882 |
| chr_1 | g10748 | g10748.t24 | TTS | g10748.t24 | 11695497 | 11695497 |
Sequences
>g10748.t24 Gene=g10748 Length=1349
CGAAATTTTCTCAACTCGGATTAGTGACTCTGTAGATTTTCGTGCCATTATACAGATTTT
TACGCCTTTTCAAAAGTTAAAAGGTTTAGAGAAAGCGACTTCGACAGTTCCCAGGTCAGG
AATAAAAGAGAGTTTAGTCAACCACAGGAGTTTATAATCTTCCCATAAACCACACACCAT
ACACATTATATAGTCAAAACTCATCCCCAGATCCTAGAGTAATTTTTAAGAACTGTCTTC
ATTAAAATAAAGAACTACTTCTCGAATTTTAAAGGAAACACACATAAAAATCAGAAGCAA
ATATGTCAACCGTTGATAAAGAAGAACTTGTCCAGAAAGCAAAACTTGCTGAACAGTCTG
AAAGATATGATGATATGGCACAAGCCATGAAATCTGTCACAGAAACAGGCGTAGAGCTCT
CAAATGAAGAACGAAATTTACTGTCAGTTGCTTACAAAAATGTAGTCGGAGCCAGACGAT
CATCATGGCGTGTAATTTCATCAATTGAACAAAAAACCGAATCCTCAGCTCGAAAGCAAC
AGTTGGCCCGAGAATACAGAGAGCGTGTTGAAAAAGAGCTTAGGGAAATTTGTTATGAAG
GACTTTTGGATAAATTTTTAATTCCCAAAGCCAGTAATCCAGAAAGTAAAGTCTTCTACT
TGAAAATGAAAGGCGATTACTACAGATATTTAGCAGAAGTTGCTACCGGTGAAACACGCA
ACTCTGTTGTTGAAGATTCCCAGAAAGCCTATCAAGACGCCTTCGATATTGCAAAGAATG
ACATGCAGCCTACACATCCTATTCGTTTGGGTTTGGCATTAAATTTCTCTGTGTTTTACT
ATGAAATTCTGAGTAGTCCAGAGAAAGCCTGCCAGCTAGCAAAACAGGCTTTCGATGACG
CTATCGCAGAATTGGACACACTAAATGAGGACTCATATAAAGATTCAACCCTTATCATGC
AGCTGTTGAGAGATAACCTTACTTTATGGACATCTGATACGCAAGGGGACGGTGATGAAG
CACCAGTTGGAGATGATAACTAACCAAACTAAATTATCACAAATTCGAGATGATAATGAA
ACAACTAAAACAAATTTAAATAAGATAATTTTGCGTCGCAGAGAGAAAAAATCGATTAAT
GCAGTTATATAAAATATATTTTTTTTCTTCGATTTAAATTGAGTCAACTGAAGAAAAGAT
TCTTTTTTATTATATAAAACAAATACGCGCAGTTTTATAAGAGAAAGTTATTAAATGTAT
TCCTTATTATTTTTCTCTTGATTCATTTGTTCTTTTCTTAATTTATTATTATAATTGTCT
TCAAAAGCGCTTTTATCAGGATAATAAAA
>g10748.t24 Gene=g10748 Length=246
MSTVDKEELVQKAKLAEQSERYDDMAQAMKSVTETGVELSNEERNLLSVAYKNVVGARRS
SWRVISSIEQKTESSARKQQLAREYRERVEKELREICYEGLLDKFLIPKASNPESKVFYL
KMKGDYYRYLAEVATGETRNSVVEDSQKAYQDAFDIAKNDMQPTHPIRLGLALNFSVFYY
EILSSPEKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDEA
PVGDDN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g10748.t24 | Coils | Coil | Coil | 75 | 95 | - |
| 11 | g10748.t24 | Coils | Coil | Coil | 190 | 210 | - |
| 10 | g10748.t24 | Gene3D | G3DSA:1.20.190.20 | - | 1 | 245 | 2.9E-123 |
| 2 | g10748.t24 | PANTHER | PTHR18860 | 14-3-3 PROTEIN | 5 | 243 | 5.5E-134 |
| 3 | g10748.t24 | PANTHER | PTHR18860:SF7 | 14-3-3 PROTEIN ZETA/DELTA | 5 | 243 | 5.5E-134 |
| 13 | g10748.t24 | PIRSF | PIRSF000868 | 14-3-3 | 1 | 241 | 1.2E-114 |
| 8 | g10748.t24 | PRINTS | PR00305 | 14-3-3 protein zeta signature | 38 | 67 | 8.9E-74 |
| 5 | g10748.t24 | PRINTS | PR00305 | 14-3-3 protein zeta signature | 114 | 136 | 8.9E-74 |
| 4 | g10748.t24 | PRINTS | PR00305 | 14-3-3 protein zeta signature | 149 | 175 | 8.9E-74 |
| 7 | g10748.t24 | PRINTS | PR00305 | 14-3-3 protein zeta signature | 176 | 202 | 8.9E-74 |
| 6 | g10748.t24 | PRINTS | PR00305 | 14-3-3 protein zeta signature | 203 | 232 | 8.9E-74 |
| 1 | g10748.t24 | Pfam | PF00244 | 14-3-3 protein | 12 | 230 | 3.7E-104 |
| 14 | g10748.t24 | ProSitePatterns | PS00796 | 14-3-3 proteins signature 1. | 44 | 54 | - |
| 15 | g10748.t24 | ProSitePatterns | PS00797 | 14-3-3 proteins signature 2. | 212 | 231 | - |
| 16 | g10748.t24 | SMART | SM00101 | 1433_4 | 6 | 243 | 7.1E-144 |
| 9 | g10748.t24 | SUPERFAMILY | SSF48445 | 14-3-3 protein | 5 | 232 | 1.03E-101 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K16197 (14-3-3 protein beta/theta/zeta)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed