Gene loci information

Transcript annotation

  • This transcript has been annotated as 14-3-3 protein zeta.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10748 g10748.t43 TSS g10748.t43 11685100 11685100
chr_1 g10748 g10748.t43 isoform g10748.t43 11685107 11695500
chr_1 g10748 g10748.t43 exon g10748.t43.exon1 11685107 11685188
chr_1 g10748 g10748.t43 exon g10748.t43.exon2 11691232 11691367
chr_1 g10748 g10748.t43 exon g10748.t43.exon3 11691424 11691513
chr_1 g10748 g10748.t43 cds g10748.t43.CDS1 11691452 11691513
chr_1 g10748 g10748.t43 exon g10748.t43.exon4 11691725 11691838
chr_1 g10748 g10748.t43 cds g10748.t43.CDS2 11691725 11691838
chr_1 g10748 g10748.t43 exon g10748.t43.exon5 11691911 11692025
chr_1 g10748 g10748.t43 cds g10748.t43.CDS3 11691911 11692025
chr_1 g10748 g10748.t43 exon g10748.t43.exon6 11692186 11692309
chr_1 g10748 g10748.t43 cds g10748.t43.CDS4 11692186 11692309
chr_1 g10748 g10748.t43 exon g10748.t43.exon7 11693133 11693296
chr_1 g10748 g10748.t43 cds g10748.t43.CDS5 11693133 11693296
chr_1 g10748 g10748.t43 exon g10748.t43.exon8 11694727 11695500
chr_1 g10748 g10748.t43 cds g10748.t43.CDS6 11694727 11694882
chr_1 g10748 g10748.t43 TTS g10748.t43 11695497 11695497

Sequences

>g10748.t43 Gene=g10748 Length=1599
CGAAATTTTCTCAACTCGGATTAGTGACTCTGTAGATTTTCGTGCCATTATACAGATTTT
TACGCCTTTTCAAAAGTTAAAAGGTTTAGAGAAAGCGACTTCGACAGTTCCCAGGTCAGG
AATAAAAGAGAGTTTAGTCAACCACAGGAGTTTATAATCTTCCCATAAACCACACACCAT
ACACATTATATAGTCAAAACTCATCCCCAGATCCTAGAGAAACACACATAAAAATCAGAA
GCAAATATGTCAACCGTTGATAAAGAAGAACTTGTCCAGAAAGCAAAACTTGCTGAACAG
TCTGAAAGATATGATGATATGGCACAAGCCATGAAATCTGTCACAGAAACAGGCGTAGAG
CTCTCAAATGAAGAACGAAATTTACTGTCAGTTGCTTACAAAAATGTAGTCGGAGCCAGA
CGTGTAATTTCATCAATTGAACAAAAAACCGAATCCTCAGCTCGAAAGCAACAGTTGGCC
CGAGAATACAGAGAGCGTGTTGAAAAAGAGCTTAGGGAAATTTGTTATGAAGTGCTGGGA
CTTTTGGATAAATTTTTAATTCCCAAAGCCAGTAATCCAGAAAGTAAAGTCTTCTACTTG
AAAATGAAAGGCGATTACTACAGATATTTAGCAGAAGTTGCTACCGGTGAAACACGCAAC
TCTGTTGTTGAAGATTCCCAGAAAGCCTATCAAGACGCCTTCGATATTGCAAAGAATGAC
ATGCAGCCTACACATCCTATTCGTTTGGGTTTGGCATTAAATTTCTCTGTGTTTTACTAT
GAAATTCTGAGTAGTCCAGAGAAAGCCTGCCAGCTAGCAAAACAGGCTTTCGATGACGCT
ATCGCAGAATTGGACACACTAAATGAGGACTCATATAAAGATTCAACCCTTATCATGCAG
CTGTTGAGAGATAACCTTACTTTATGGACATCTGATACGCAAGGGGACGGTGATGAAGCA
CCAGTTGGAGATGATAACTAACCAAACTAAATTATCACAAATTCGAGATGATAATGAAAC
AACTAAAACAAATTTAAATAAGATAATTTTGCGTCGCAGAGAGAAAAAATCGATTAATGC
AGTTATATAAAATATATTTTTTTTCTTCGATTTAAATTGAGTCAACTGAAGAAAAGATTC
TTTTTTATTATATAAAACAAATACGCGCAGTTTTATAAGAGAAAGTTATTAAATGTATTC
CTTATTATTTTTCTCTTGATTCATTTGTTCTTTTCTTAATTTATTATTATAATTGTCTTC
AAAAGCGCTTTTATCAGGATAATAAAAACACAAACACAGACACTTAGATATTGATTGATA
TCAGTCTTCGAAAACAGCAAAAATAAACACGTATAAGAATTACGAAGAAAGCTTTTTTAT
AGAATCAAAAAAAACCAGAGTGTGGACCTCATTCAACAACAACCGACTACCGCTGACACA
CTCTTTAATTCAGAGAAGAACTGCAAAAAAATTTATTTCATTTTAATTTTTAACATCCAA
TTGATAGTCATTTATATTTTCTGTTGAACATATTATTTGCTTTTGGATTTTTGTCATTTT
AAAACAAAAAAGAATAAAACTTTACATTACACAACCAAA

>g10748.t43 Gene=g10748 Length=244
MSTVDKEELVQKAKLAEQSERYDDMAQAMKSVTETGVELSNEERNLLSVAYKNVVGARRV
ISSIEQKTESSARKQQLAREYRERVEKELREICYEVLGLLDKFLIPKASNPESKVFYLKM
KGDYYRYLAEVATGETRNSVVEDSQKAYQDAFDIAKNDMQPTHPIRLGLALNFSVFYYEI
LSSPEKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDEAPV
GDDN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g10748.t43 Coils Coil Coil 71 91 -
11 g10748.t43 Coils Coil Coil 188 208 -
10 g10748.t43 Gene3D G3DSA:1.20.190.20 - 1 243 1.1E-120
2 g10748.t43 PANTHER PTHR18860 14-3-3 PROTEIN 5 241 8.8E-131
3 g10748.t43 PANTHER PTHR18860:SF7 14-3-3 PROTEIN ZETA/DELTA 5 241 8.8E-131
13 g10748.t43 PIRSF PIRSF000868 14-3-3 1 239 1.2E-112
7 g10748.t43 PRINTS PR00305 14-3-3 protein zeta signature 38 67 1.1E-69
5 g10748.t43 PRINTS PR00305 14-3-3 protein zeta signature 112 134 1.1E-69
4 g10748.t43 PRINTS PR00305 14-3-3 protein zeta signature 147 173 1.1E-69
8 g10748.t43 PRINTS PR00305 14-3-3 protein zeta signature 174 200 1.1E-69
6 g10748.t43 PRINTS PR00305 14-3-3 protein zeta signature 201 230 1.1E-69
1 g10748.t43 Pfam PF00244 14-3-3 protein 12 228 2.1E-101
14 g10748.t43 ProSitePatterns PS00796 14-3-3 proteins signature 1. 44 54 -
15 g10748.t43 ProSitePatterns PS00797 14-3-3 proteins signature 2. 210 229 -
16 g10748.t43 SMART SM00101 1433_4 6 241 2.4E-140
9 g10748.t43 SUPERFAMILY SSF48445 14-3-3 protein 5 230 4.06E-100

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed