Gene loci information

Transcript annotation

  • This transcript has been annotated as 14-3-3 protein zeta.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10748 g10748.t48 TSS g10748.t48 11685100 11685100
chr_1 g10748 g10748.t48 isoform g10748.t48 11685138 11693292
chr_1 g10748 g10748.t48 exon g10748.t48.exon1 11685138 11685201
chr_1 g10748 g10748.t48 exon g10748.t48.exon2 11691725 11691838
chr_1 g10748 g10748.t48 cds g10748.t48.CDS1 11691735 11691838
chr_1 g10748 g10748.t48 exon g10748.t48.exon3 11691899 11692025
chr_1 g10748 g10748.t48 cds g10748.t48.CDS2 11691899 11692025
chr_1 g10748 g10748.t48 exon g10748.t48.exon4 11692186 11692309
chr_1 g10748 g10748.t48 cds g10748.t48.CDS3 11692186 11692309
chr_1 g10748 g10748.t48 exon g10748.t48.exon5 11693133 11693292
chr_1 g10748 g10748.t48 cds g10748.t48.CDS4 11693133 11693290
chr_1 g10748 g10748.t48 TTS g10748.t48 NA NA

Sequences

>g10748.t48 Gene=g10748 Length=589
GTAGATTTTCGTGCCATTATACAGATTTTTACGCCTTTTCAAAAGTTAAAAGTAAGTAAC
ACACATATGATGATATGGCACAAGCCATGAAATCTGTCACAGAAACAGGCGTAGAGCTCT
CAAATGAAGAACGAAATTTACTGTCAGTTGCTTACAAAAATGTAGTCGGAGCCAGACGAT
CATCATGGCGTGTAATTTCATCAATTGAACAAAAAACCGAATCCTCAGCTCGAAAGCAAC
AGTTGGCCCGAGAATACAGAGAGCGTGTTGAAAAAGAGCTTAGGGAAATTTGTTATGAAG
TGCTGGGACTTTTGGATAAATTTTTAATTCCCAAAGCCAGTAATCCAGAAAGTAAAGTCT
TCTACTTGAAAATGAAAGGCGATTACTACAGATATTTAGCAGAAGTTGCTACCGGTGAAA
CACGCAACTCTGTTGTTGAAGATTCCCAGAAAGCCTATCAAGACGCCTTCGATATTGCAA
AGAATGACATGCAGCCTACACATCCTATTCGTTTGGGTTTGGCATTAAATTTCTCTGTGT
TTTACTATGAAATTCTGAGTAGTCCAGAGAAAGCCTGCCAGCTAGCAAA

>g10748.t48 Gene=g10748 Length=171
MAQAMKSVTETGVELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTESSARKQQLARE
YRERVEKELREICYEVLGLLDKFLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRNSV
VEDSQKAYQDAFDIAKNDMQPTHPIRLGLALNFSVFYYEILSSPEKACQLA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g10748.t48 Coils Coil Coil 51 71 -
10 g10748.t48 Gene3D G3DSA:1.20.190.20 - 1 171 8.4E-89
2 g10748.t48 PANTHER PTHR18860 14-3-3 PROTEIN 1 171 7.8E-93
3 g10748.t48 PANTHER PTHR18860:SF7 14-3-3 PROTEIN ZETA/DELTA 1 171 7.8E-93
6 g10748.t48 PRINTS PR00305 14-3-3 protein zeta signature 14 43 1.1E-63
5 g10748.t48 PRINTS PR00305 14-3-3 protein zeta signature 61 85 1.1E-63
4 g10748.t48 PRINTS PR00305 14-3-3 protein zeta signature 92 114 1.1E-63
8 g10748.t48 PRINTS PR00305 14-3-3 protein zeta signature 127 153 1.1E-63
7 g10748.t48 PRINTS PR00305 14-3-3 protein zeta signature 154 171 1.1E-63
1 g10748.t48 Pfam PF00244 14-3-3 protein 1 171 9.9E-79
12 g10748.t48 ProSitePatterns PS00796 14-3-3 proteins signature 1. 20 30 -
13 g10748.t48 SMART SM00101 1433_4 1 171 1.0E-66
9 g10748.t48 SUPERFAMILY SSF48445 14-3-3 protein 1 171 2.62E-75

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values