Gene loci information

Transcript annotation

  • This transcript has been annotated as 14-3-3 protein zeta.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10748 g10748.t52 TSS g10748.t52 11685100 11685100
chr_1 g10748 g10748.t52 isoform g10748.t52 11685138 11694882
chr_1 g10748 g10748.t52 exon g10748.t52.exon1 11685138 11685188
chr_1 g10748 g10748.t52 exon g10748.t52.exon2 11691232 11691513
chr_1 g10748 g10748.t52 cds g10748.t52.CDS1 11691452 11691513
chr_1 g10748 g10748.t52 exon g10748.t52.exon3 11691725 11691838
chr_1 g10748 g10748.t52 cds g10748.t52.CDS2 11691725 11691838
chr_1 g10748 g10748.t52 exon g10748.t52.exon4 11691899 11692025
chr_1 g10748 g10748.t52 cds g10748.t52.CDS3 11691899 11692025
chr_1 g10748 g10748.t52 exon g10748.t52.exon5 11692186 11692309
chr_1 g10748 g10748.t52 cds g10748.t52.CDS4 11692186 11692309
chr_1 g10748 g10748.t52 exon g10748.t52.exon6 11692603 11692760
chr_1 g10748 g10748.t52 cds g10748.t52.CDS5 11692603 11692760
chr_1 g10748 g10748.t52 exon g10748.t52.exon7 11694727 11694882
chr_1 g10748 g10748.t52 cds g10748.t52.CDS6 11694727 11694882
chr_1 g10748 g10748.t52 TTS g10748.t52 11695497 11695497

Sequences

>g10748.t52 Gene=g10748 Length=1012
GTAGATTTTCGTGCCATTATACAGATTTTTACGCCTTTTCAAAAGTTAAAAGGTTTAGAG
AAAGCGACTTCGACAGTTCCCAGGTCAGGAATAAAAGAGAGTTTAGTCAACCACAGGAGT
TTATAATCTTCCCATAAACCACACACCATACACATTATATAGTCAAAACTCATCCCCAGA
TCCTAGAGTAATTTTTAAGAACTGTCTTCATTAAAATAAAGAACTACTTCTCGAATTTTA
AAGGAAACACACATAAAAATCAGAAGCAAATATGTCAACCGTTGATAAAGAAGAACTTGT
CCAGAAAGCAAAACTTGCTGAACAGTCTGAAAGATATGATGATATGGCACAAGCCATGAA
ATCTGTCACAGAAACAGGCGTAGAGCTCTCAAATGAAGAACGAAATTTACTGTCAGTTGC
TTACAAAAATGTAGTCGGAGCCAGACGATCATCATGGCGTGTAATTTCATCAATTGAACA
AAAAACCGAATCCTCAGCTCGAAAGCAACAGTTGGCCCGAGAATACAGAGAGCGTGTTGA
AAAAGAGCTTAGGGAAATTTGTTATGAAGTGCTGGGACTTTTGGATAAATTTTTAATTCC
CAAAGCCAGTAATCCAGAAAGTAAAGTCTTCTACTTGAAAATGAAAGGCGATTACTACAG
ATATTTAGCAGAAGTTGCTACCGGTGAAACACGCAACTTTGATGACTCACAAGCAGCATA
CCAAGATGCATTTGAGATTAGTAAGGGCAAAATGCAACCAACACATCCAATACGTTTAGG
CTTGGCATTAAACTTCTCCGTCTTTTATTATGAGATACTCAGCTCTCCCGAGAAAGCATG
CGCTTTGGCAAAGCAGGCTTTCGATGACGCTATCGCAGAATTGGACACACTAAATGAGGA
CTCATATAAAGATTCAACCCTTATCATGCAGCTGTTGAGAGATAACCTTACTTTATGGAC
ATCTGATACGCAAGGGGACGGTGATGAAGCACCAGTTGGAGATGATAACTAA

>g10748.t52 Gene=g10748 Length=246
MSTVDKEELVQKAKLAEQSERYDDMAQAMKSVTETGVELSNEERNLLSVAYKNVVGARRS
SWRVISSIEQKTESSARKQQLAREYRERVEKELREICYEVLGLLDKFLIPKASNPESKVF
YLKMKGDYYRYLAEVATGETRNFDDSQAAYQDAFEISKGKMQPTHPIRLGLALNFSVFYY
EILSSPEKACALAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDEA
PVGDDN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g10748.t52 Coils Coil Coil 75 95 -
12 g10748.t52 Coils Coil Coil 190 210 -
11 g10748.t52 Gene3D G3DSA:1.20.190.20 - 1 245 1.3E-123
2 g10748.t52 PANTHER PTHR18860 14-3-3 PROTEIN 5 243 2.2E-134
3 g10748.t52 PANTHER PTHR18860:SF7 14-3-3 PROTEIN ZETA/DELTA 5 243 2.2E-134
14 g10748.t52 PIRSF PIRSF000868 14-3-3 1 241 4.6E-115
8 g10748.t52 PRINTS PR00305 14-3-3 protein zeta signature 38 67 1.3E-84
9 g10748.t52 PRINTS PR00305 14-3-3 protein zeta signature 85 109 1.3E-84
7 g10748.t52 PRINTS PR00305 14-3-3 protein zeta signature 116 138 1.3E-84
4 g10748.t52 PRINTS PR00305 14-3-3 protein zeta signature 149 175 1.3E-84
6 g10748.t52 PRINTS PR00305 14-3-3 protein zeta signature 176 202 1.3E-84
5 g10748.t52 PRINTS PR00305 14-3-3 protein zeta signature 203 232 1.3E-84
1 g10748.t52 Pfam PF00244 14-3-3 protein 12 230 4.8E-104
15 g10748.t52 ProSitePatterns PS00796 14-3-3 proteins signature 1. 44 54 -
16 g10748.t52 ProSitePatterns PS00797 14-3-3 proteins signature 2. 212 231 -
17 g10748.t52 SMART SM00101 1433_4 6 243 8.4E-144
10 g10748.t52 SUPERFAMILY SSF48445 14-3-3 protein 5 232 1.83E-101

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values