General information for g10748.t54
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as 14-3-3 protein zeta.
Parent gene
- The parent gene g10748 is located on chr_1: 11694759..11696924 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10748 | g10748.t54 | TSS | g10748.t54 | 11685100 | 11685100 |
| chr_1 | g10748 | g10748.t54 | isoform | g10748.t54 | 11685138 | 11694882 |
| chr_1 | g10748 | g10748.t54 | exon | g10748.t54.exon1 | 11685138 | 11685188 |
| chr_1 | g10748 | g10748.t54 | exon | g10748.t54.exon2 | 11691232 | 11691513 |
| chr_1 | g10748 | g10748.t54 | cds | g10748.t54.CDS1 | 11691452 | 11691513 |
| chr_1 | g10748 | g10748.t54 | exon | g10748.t54.exon3 | 11691725 | 11691838 |
| chr_1 | g10748 | g10748.t54 | cds | g10748.t54.CDS2 | 11691725 | 11691838 |
| chr_1 | g10748 | g10748.t54 | exon | g10748.t54.exon4 | 11691899 | 11692025 |
| chr_1 | g10748 | g10748.t54 | cds | g10748.t54.CDS3 | 11691899 | 11692025 |
| chr_1 | g10748 | g10748.t54 | exon | g10748.t54.exon5 | 11692186 | 11692319 |
| chr_1 | g10748 | g10748.t54 | cds | g10748.t54.CDS4 | 11692186 | 11692319 |
| chr_1 | g10748 | g10748.t54 | exon | g10748.t54.exon6 | 11693153 | 11693296 |
| chr_1 | g10748 | g10748.t54 | cds | g10748.t54.CDS5 | 11693153 | 11693231 |
| chr_1 | g10748 | g10748.t54 | exon | g10748.t54.exon7 | 11694727 | 11694882 |
| chr_1 | g10748 | g10748.t54 | TTS | g10748.t54 | 11695497 | 11695497 |
Sequences
>g10748.t54 Gene=g10748 Length=1008
GTAGATTTTCGTGCCATTATACAGATTTTTACGCCTTTTCAAAAGTTAAAAGGTTTAGAG
AAAGCGACTTCGACAGTTCCCAGGTCAGGAATAAAAGAGAGTTTAGTCAACCACAGGAGT
TTATAATCTTCCCATAAACCACACACCATACACATTATATAGTCAAAACTCATCCCCAGA
TCCTAGAGTAATTTTTAAGAACTGTCTTCATTAAAATAAAGAACTACTTCTCGAATTTTA
AAGGAAACACACATAAAAATCAGAAGCAAATATGTCAACCGTTGATAAAGAAGAACTTGT
CCAGAAAGCAAAACTTGCTGAACAGTCTGAAAGATATGATGATATGGCACAAGCCATGAA
ATCTGTCACAGAAACAGGCGTAGAGCTCTCAAATGAAGAACGAAATTTACTGTCAGTTGC
TTACAAAAATGTAGTCGGAGCCAGACGATCATCATGGCGTGTAATTTCATCAATTGAACA
AAAAACCGAATCCTCAGCTCGAAAGCAACAGTTGGCCCGAGAATACAGAGAGCGTGTTGA
AAAAGAGCTTAGGGAAATTTGTTATGAAGTGCTGGGACTTTTGGATAAATTTTTAATTCC
CAAAGCCAGTAATCCAGAAAGTAAAGTCTTCTACTTGAAAATGAAAGGCGATTACTACAG
ATATTTAGCAGAAGTTGCTACCGGTGAAACACGCAACTGTAAGTATTTAAAGCCTATCAA
GACGCCTTCGATATTGCAAAGAATGACATGCAGCCTACACATCCTATTCGTTTGGGTTTG
GCATTAAATTTCTCTGTGTTTTACTATGAAATTCTGAGTAGTCCAGAGAAAGCCTGCCAG
CTAGCAAAACAGGCTTTCGATGACGCTATCGCAGAATTGGACACACTAAATGAGGACTCA
TATAAAGATTCAACCCTTATCATGCAGCTGTTGAGAGATAACCTTACTTTATGGACATCT
GATACGCAAGGGGACGGTGATGAAGCACCAGTTGGAGATGATAACTAA
>g10748.t54 Gene=g10748 Length=171
MSTVDKEELVQKAKLAEQSERYDDMAQAMKSVTETGVELSNEERNLLSVAYKNVVGARRS
SWRVISSIEQKTESSARKQQLAREYRERVEKELREICYEVLGLLDKFLIPKASNPESKVF
YLKMKGDYYRYLAEVATGETRNCKYLKPIKTPSILQRMTCSLHILFVWVWH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g10748.t54 | Coils | Coil | Coil | 75 | 95 | - |
| 8 | g10748.t54 | Gene3D | G3DSA:1.20.190.20 | - | 1 | 150 | 8.8E-69 |
| 2 | g10748.t54 | PANTHER | PTHR18860 | 14-3-3 PROTEIN | 5 | 142 | 2.9E-70 |
| 3 | g10748.t54 | PANTHER | PTHR18860:SF7 | 14-3-3 PROTEIN ZETA/DELTA | 5 | 142 | 2.9E-70 |
| 5 | g10748.t54 | PRINTS | PR00305 | 14-3-3 protein zeta signature | 38 | 67 | 7.1E-37 |
| 6 | g10748.t54 | PRINTS | PR00305 | 14-3-3 protein zeta signature | 85 | 109 | 7.1E-37 |
| 4 | g10748.t54 | PRINTS | PR00305 | 14-3-3 protein zeta signature | 116 | 138 | 7.1E-37 |
| 1 | g10748.t54 | Pfam | PF00244 | 14-3-3 protein | 12 | 142 | 3.3E-56 |
| 10 | g10748.t54 | ProSitePatterns | PS00796 | 14-3-3 proteins signature 1. | 44 | 54 | - |
| 11 | g10748.t54 | SMART | SM00101 | 1433_4 | 6 | 171 | 7.1E-35 |
| 7 | g10748.t54 | SUPERFAMILY | SSF48445 | 14-3-3 protein | 5 | 143 | 4.71E-58 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
