General information for g10748.t64
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as 14-3-3 protein zeta.
Parent gene
- The parent gene g10748 is located on chr_1: 11694759..11696924 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10748 | g10748.t64 | TSS | g10748.t64 | 11685100 | 11685100 |
| chr_1 | g10748 | g10748.t64 | isoform | g10748.t64 | 11685138 | 11695237 |
| chr_1 | g10748 | g10748.t64 | exon | g10748.t64.exon1 | 11685138 | 11685188 |
| chr_1 | g10748 | g10748.t64 | exon | g10748.t64.exon2 | 11691232 | 11691367 |
| chr_1 | g10748 | g10748.t64 | exon | g10748.t64.exon3 | 11691424 | 11691513 |
| chr_1 | g10748 | g10748.t64 | cds | g10748.t64.CDS1 | 11691452 | 11691513 |
| chr_1 | g10748 | g10748.t64 | exon | g10748.t64.exon4 | 11691725 | 11691838 |
| chr_1 | g10748 | g10748.t64 | cds | g10748.t64.CDS2 | 11691725 | 11691838 |
| chr_1 | g10748 | g10748.t64 | exon | g10748.t64.exon5 | 11691899 | 11692019 |
| chr_1 | g10748 | g10748.t64 | cds | g10748.t64.CDS3 | 11691899 | 11692019 |
| chr_1 | g10748 | g10748.t64 | exon | g10748.t64.exon6 | 11692186 | 11692309 |
| chr_1 | g10748 | g10748.t64 | cds | g10748.t64.CDS4 | 11692186 | 11692309 |
| chr_1 | g10748 | g10748.t64 | exon | g10748.t64.exon7 | 11693696 | 11693832 |
| chr_1 | g10748 | g10748.t64 | cds | g10748.t64.CDS5 | 11693696 | 11693832 |
| chr_1 | g10748 | g10748.t64 | exon | g10748.t64.exon8 | 11694146 | 11694172 |
| chr_1 | g10748 | g10748.t64 | cds | g10748.t64.CDS6 | 11694146 | 11694172 |
| chr_1 | g10748 | g10748.t64 | exon | g10748.t64.exon9 | 11694727 | 11695237 |
| chr_1 | g10748 | g10748.t64 | cds | g10748.t64.CDS7 | 11694727 | 11694882 |
| chr_1 | g10748 | g10748.t64 | TTS | g10748.t64 | 11695497 | 11695497 |
Sequences
>g10748.t64 Gene=g10748 Length=1311
GTAGATTTTCGTGCCATTATACAGATTTTTACGCCTTTTCAAAAGTTAAAAGGTTTAGAG
AAAGCGACTTCGACAGTTCCCAGGTCAGGAATAAAAGAGAGTTTAGTCAACCACAGGAGT
TTATAATCTTCCCATAAACCACACACCATACACATTATATAGTCAAAACTCATCCCCAGA
TCCTAGAGAAACACACATAAAAATCAGAAGCAAATATGTCAACCGTTGATAAAGAAGAAC
TTGTCCAGAAAGCAAAACTTGCTGAACAGTCTGAAAGATATGATGATATGGCACAAGCCA
TGAAATCTGTCACAGAAACAGGCGTAGAGCTCTCAAATGAAGAACGAAATTTACTGTCAG
TTGCTTACAAAAATGTAGTCGGAGCCAGACGATCATCATGGCGTGTAATTTCATCAATTG
AACAAAAAACCGAATCCTCAGCTCGAAAGCAACAGTTGGCCCGAGAATACAGAGAGCGTG
TTGAAAAAGAGCTTAGGGAAATTTGTTATGAAGGACTTTTGGATAAATTTTTAATTCCCA
AAGCCAGTAATCCAGAAAGTAAAGTCTTCTACTTGAAAATGAAAGGCGATTACTACAGAT
ATTTAGCAGAAGTTGCTACCGGTGAAACACGCAACTCCGTTGTTGATGATTCTCAAAAAG
CTTATCAGGAAGCTTTTGATATCGCCAAAACCAAAATGCAGCCAACACATCCAATTCGCT
TAGGTCTCGCACTTAATTTCTCAGTATTTTACTACGAGATAATCAGTTCACCTGCAAGAG
CATGCCATCTCGCAAAACAGGCTTTCGATGACGCTATCGCAGAATTGGACACACTAAATG
AGGACTCATATAAAGATTCAACCCTTATCATGCAGCTGTTGAGAGATAACCTTACTTTAT
GGACATCTGATACGCAAGGGGACGGTGATGAAGCACCAGTTGGAGATGATAACTAACCAA
ACTAAATTATCACAAATTCGAGATGATAATGAAACAACTAAAACAAATTTAAATAAGATA
ATTTTGCGTCGCAGAGAGAAAAAATCGATTAATGCAGTTATATAAAATATATTTTTTTTC
TTCGATTTAAATTGAGTCAACTGAAGAAAAGATTCTTTTTTATTATATAAAACAAATACG
CGCAGTTTTATAAGAGAAAGTTATTAAATGTATTCCTTATTATTTTTCTCTTGATTCATT
TGTTCTTTTCTTAATTTATTATTATAATTGTCTTCAAAAGCGCTTTTATCAGGATAATAA
AAACACAAACACAGACACTTAGATATTGATTGATATCAGTCTTCGAAAACA
>g10748.t64 Gene=g10748 Length=246
MSTVDKEELVQKAKLAEQSERYDDMAQAMKSVTETGVELSNEERNLLSVAYKNVVGARRS
SWRVISSIEQKTESSARKQQLAREYRERVEKELREICYEGLLDKFLIPKASNPESKVFYL
KMKGDYYRYLAEVATGETRNSVVDDSQKAYQEAFDIAKTKMQPTHPIRLGLALNFSVFYY
EIISSPARACHLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDEA
PVGDDN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g10748.t64 | Coils | Coil | Coil | 75 | 95 | - |
| 10 | g10748.t64 | Gene3D | G3DSA:1.20.190.20 | - | 1 | 245 | 1.5E-122 |
| 2 | g10748.t64 | PANTHER | PTHR18860 | 14-3-3 PROTEIN | 5 | 243 | 8.4E-133 |
| 3 | g10748.t64 | PANTHER | PTHR18860:SF7 | 14-3-3 PROTEIN ZETA/DELTA | 5 | 243 | 8.4E-133 |
| 12 | g10748.t64 | PIRSF | PIRSF000868 | 14-3-3 | 1 | 241 | 2.2E-113 |
| 8 | g10748.t64 | PRINTS | PR00305 | 14-3-3 protein zeta signature | 38 | 67 | 9.9E-74 |
| 5 | g10748.t64 | PRINTS | PR00305 | 14-3-3 protein zeta signature | 114 | 136 | 9.9E-74 |
| 4 | g10748.t64 | PRINTS | PR00305 | 14-3-3 protein zeta signature | 149 | 175 | 9.9E-74 |
| 7 | g10748.t64 | PRINTS | PR00305 | 14-3-3 protein zeta signature | 176 | 202 | 9.9E-74 |
| 6 | g10748.t64 | PRINTS | PR00305 | 14-3-3 protein zeta signature | 203 | 232 | 9.9E-74 |
| 1 | g10748.t64 | Pfam | PF00244 | 14-3-3 protein | 12 | 230 | 1.9E-103 |
| 13 | g10748.t64 | ProSitePatterns | PS00796 | 14-3-3 proteins signature 1. | 44 | 54 | - |
| 14 | g10748.t64 | ProSitePatterns | PS00797 | 14-3-3 proteins signature 2. | 212 | 231 | - |
| 15 | g10748.t64 | SMART | SM00101 | 1433_4 | 6 | 243 | 8.3E-143 |
| 9 | g10748.t64 | SUPERFAMILY | SSF48445 | 14-3-3 protein | 5 | 232 | 1.57E-100 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K16197 (14-3-3 protein beta/theta/zeta)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed