General information for g10748.t66
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as 14-3-3 protein zeta.
Parent gene
- The parent gene g10748 is located on chr_1: 11694759..11696924 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10748 | g10748.t66 | TSS | g10748.t66 | 11685100 | 11685100 |
| chr_1 | g10748 | g10748.t66 | isoform | g10748.t66 | 11685185 | 11694882 |
| chr_1 | g10748 | g10748.t66 | exon | g10748.t66.exon1 | 11685185 | 11685245 |
| chr_1 | g10748 | g10748.t66 | exon | g10748.t66.exon2 | 11691232 | 11691513 |
| chr_1 | g10748 | g10748.t66 | cds | g10748.t66.CDS1 | 11691452 | 11691513 |
| chr_1 | g10748 | g10748.t66 | exon | g10748.t66.exon3 | 11691725 | 11691838 |
| chr_1 | g10748 | g10748.t66 | cds | g10748.t66.CDS2 | 11691725 | 11691838 |
| chr_1 | g10748 | g10748.t66 | exon | g10748.t66.exon4 | 11691899 | 11692025 |
| chr_1 | g10748 | g10748.t66 | cds | g10748.t66.CDS3 | 11691899 | 11692025 |
| chr_1 | g10748 | g10748.t66 | exon | g10748.t66.exon5 | 11692186 | 11692313 |
| chr_1 | g10748 | g10748.t66 | cds | g10748.t66.CDS4 | 11692186 | 11692313 |
| chr_1 | g10748 | g10748.t66 | exon | g10748.t66.exon6 | 11692603 | 11692760 |
| chr_1 | g10748 | g10748.t66 | cds | g10748.t66.CDS5 | 11692603 | 11692606 |
| chr_1 | g10748 | g10748.t66 | exon | g10748.t66.exon7 | 11694727 | 11694882 |
| chr_1 | g10748 | g10748.t66 | TTS | g10748.t66 | 11695497 | 11695497 |
Sequences
>g10748.t66 Gene=g10748 Length=1026
AAAAGTAAGTAACACACGTACATTAAAGCTTAAATAATGTGTAAAAGTTGTTGGTAAAGT
GGGTTTAGAGAAAGCGACTTCGACAGTTCCCAGGTCAGGAATAAAAGAGAGTTTAGTCAA
CCACAGGAGTTTATAATCTTCCCATAAACCACACACCATACACATTATATAGTCAAAACT
CATCCCCAGATCCTAGAGTAATTTTTAAGAACTGTCTTCATTAAAATAAAGAACTACTTC
TCGAATTTTAAAGGAAACACACATAAAAATCAGAAGCAAATATGTCAACCGTTGATAAAG
AAGAACTTGTCCAGAAAGCAAAACTTGCTGAACAGTCTGAAAGATATGATGATATGGCAC
AAGCCATGAAATCTGTCACAGAAACAGGCGTAGAGCTCTCAAATGAAGAACGAAATTTAC
TGTCAGTTGCTTACAAAAATGTAGTCGGAGCCAGACGATCATCATGGCGTGTAATTTCAT
CAATTGAACAAAAAACCGAATCCTCAGCTCGAAAGCAACAGTTGGCCCGAGAATACAGAG
AGCGTGTTGAAAAAGAGCTTAGGGAAATTTGTTATGAAGTGCTGGGACTTTTGGATAAAT
TTTTAATTCCCAAAGCCAGTAATCCAGAAAGTAAAGTCTTCTACTTGAAAATGAAAGGCG
ATTACTACAGATATTTAGCAGAAGTTGCTACCGGTGAAACACGCAACTGTAATTGATGAC
TCACAAGCAGCATACCAAGATGCATTTGAGATTAGTAAGGGCAAAATGCAACCAACACAT
CCAATACGTTTAGGCTTGGCATTAAACTTCTCCGTCTTTTATTATGAGATACTCAGCTCT
CCCGAGAAAGCATGCGCTTTGGCAAAGCAGGCTTTCGATGACGCTATCGCAGAATTGGAC
ACACTAAATGAGGACTCATATAAAGATTCAACCCTTATCATGCAGCTGTTGAGAGATAAC
CTTACTTTATGGACATCTGATACGCAAGGGGACGGTGATGAAGCACCAGTTGGAGATGAT
AACTAA
>g10748.t66 Gene=g10748 Length=144
MSTVDKEELVQKAKLAEQSERYDDMAQAMKSVTETGVELSNEERNLLSVAYKNVVGARRS
SWRVISSIEQKTESSARKQQLAREYRERVEKELREICYEVLGLLDKFLIPKASNPESKVF
YLKMKGDYYRYLAEVATGETRNCN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g10748.t66 | Coils | Coil | Coil | 75 | 95 | - |
| 8 | g10748.t66 | Gene3D | G3DSA:1.20.190.20 | - | 1 | 144 | 7.3E-69 |
| 2 | g10748.t66 | PANTHER | PTHR18860 | 14-3-3 PROTEIN | 5 | 141 | 1.4E-70 |
| 3 | g10748.t66 | PANTHER | PTHR18860:SF7 | 14-3-3 PROTEIN ZETA/DELTA | 5 | 141 | 1.4E-70 |
| 5 | g10748.t66 | PRINTS | PR00305 | 14-3-3 protein zeta signature | 38 | 67 | 5.7E-37 |
| 6 | g10748.t66 | PRINTS | PR00305 | 14-3-3 protein zeta signature | 85 | 109 | 5.7E-37 |
| 4 | g10748.t66 | PRINTS | PR00305 | 14-3-3 protein zeta signature | 116 | 138 | 5.7E-37 |
| 1 | g10748.t66 | Pfam | PF00244 | 14-3-3 protein | 12 | 142 | 1.1E-56 |
| 10 | g10748.t66 | ProSitePatterns | PS00796 | 14-3-3 proteins signature 1. | 44 | 54 | - |
| 11 | g10748.t66 | SMART | SM00101 | 1433_4 | 6 | 144 | 3.4E-29 |
| 7 | g10748.t66 | SUPERFAMILY | SSF48445 | 14-3-3 protein | 5 | 142 | 7.19E-58 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed