Gene loci information

Transcript annotation

  • This transcript has been annotated as 14-3-3 protein zeta.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10748 g10748.t67 TSS g10748.t67 11685100 11685100
chr_1 g10748 g10748.t67 isoform g10748.t67 11685205 11695500
chr_1 g10748 g10748.t67 exon g10748.t67.exon1 11685205 11685245
chr_1 g10748 g10748.t67 exon g10748.t67.exon2 11691232 11691504
chr_1 g10748 g10748.t67 cds g10748.t67.CDS1 11691452 11691504
chr_1 g10748 g10748.t67 exon g10748.t67.exon3 11691725 11691838
chr_1 g10748 g10748.t67 cds g10748.t67.CDS2 11691725 11691838
chr_1 g10748 g10748.t67 exon g10748.t67.exon4 11691899 11692025
chr_1 g10748 g10748.t67 cds g10748.t67.CDS3 11691899 11692025
chr_1 g10748 g10748.t67 exon g10748.t67.exon5 11692186 11692309
chr_1 g10748 g10748.t67 cds g10748.t67.CDS4 11692186 11692309
chr_1 g10748 g10748.t67 exon g10748.t67.exon6 11693133 11693296
chr_1 g10748 g10748.t67 cds g10748.t67.CDS5 11693133 11693296
chr_1 g10748 g10748.t67 exon g10748.t67.exon7 11694727 11695203
chr_1 g10748 g10748.t67 cds g10748.t67.CDS6 11694727 11694882
chr_1 g10748 g10748.t67 exon g10748.t67.exon8 11695300 11695500
chr_1 g10748 g10748.t67 TTS g10748.t67 11695497 11695497

Sequences

>g10748.t67 Gene=g10748 Length=1521
CATTAAAGCTTAAATAATGTGTAAAAGTTGTTGGTAAAGTGGGTTTAGAGAAAGCGACTT
CGACAGTTCCCAGGTCAGGAATAAAAGAGAGTTTAGTCAACCACAGGAGTTTATAATCTT
CCCATAAACCACACACCATACACATTATATAGTCAAAACTCATCCCCAGATCCTAGAGTA
ATTTTTAAGAACTGTCTTCATTAAAATAAAGAACTACTTCTCGAATTTTAAAGGAAACAC
ACATAAAAATCAGAAGCAAATATGTCAACCGTTGATAAAGAAGAACTTGTCCAGAAAGCA
AAACTTGCTGAACAATATGATGATATGGCACAAGCCATGAAATCTGTCACAGAAACAGGC
GTAGAGCTCTCAAATGAAGAACGAAATTTACTGTCAGTTGCTTACAAAAATGTAGTCGGA
GCCAGACGATCATCATGGCGTGTAATTTCATCAATTGAACAAAAAACCGAATCCTCAGCT
CGAAAGCAACAGTTGGCCCGAGAATACAGAGAGCGTGTTGAAAAAGAGCTTAGGGAAATT
TGTTATGAAGTGCTGGGACTTTTGGATAAATTTTTAATTCCCAAAGCCAGTAATCCAGAA
AGTAAAGTCTTCTACTTGAAAATGAAAGGCGATTACTACAGATATTTAGCAGAAGTTGCT
ACCGGTGAAACACGCAACTCTGTTGTTGAAGATTCCCAGAAAGCCTATCAAGACGCCTTC
GATATTGCAAAGAATGACATGCAGCCTACACATCCTATTCGTTTGGGTTTGGCATTAAAT
TTCTCTGTGTTTTACTATGAAATTCTGAGTAGTCCAGAGAAAGCCTGCCAGCTAGCAAAA
CAGGCTTTCGATGACGCTATCGCAGAATTGGACACACTAAATGAGGACTCATATAAAGAT
TCAACCCTTATCATGCAGCTGTTGAGAGATAACCTTACTTTATGGACATCTGATACGCAA
GGGGACGGTGATGAAGCACCAGTTGGAGATGATAACTAACCAAACTAAATTATCACAAAT
TCGAGATGATAATGAAACAACTAAAACAAATTTAAATAAGATAATTTTGCGTCGCAGAGA
GAAAAAATCGATTAATGCAGTTATATAAAATATATTTTTTTTCTTCGATTTAAATTGAGT
CAACTGAAGAAAAGATTCTTTTTTATTATATAAAACAAATACGCGCAGTTTTATAAGAGA
AAGTTATTAAATGTATTCCTTATTATTTTTCTCTTGATTCATTTGTTCTTTTCTTAATTT
ATTATTATAATTGTCTTCAAAAGCGCTTTTATCAGGATAATAAAAACACAAACACAGACA
AGTGTGGACCTCATTCAACAACAACCGACTACCGCTGACACACTCTTTAATTCAGAGAAG
AACTGCAAAAAAATTTATTTCATTTTAATTTTTAACATCCAATTGATAGTCATTTATATT
TTCTGTTGAACATATTATTTGCTTTTGGATTTTTGTCATTTTAAAACAAAAAAGAATAAA
ACTTTACATTACACAACCAAA

>g10748.t67 Gene=g10748 Length=245
MSTVDKEELVQKAKLAEQYDDMAQAMKSVTETGVELSNEERNLLSVAYKNVVGARRSSWR
VISSIEQKTESSARKQQLAREYRERVEKELREICYEVLGLLDKFLIPKASNPESKVFYLK
MKGDYYRYLAEVATGETRNSVVEDSQKAYQDAFDIAKNDMQPTHPIRLGLALNFSVFYYE
ILSSPEKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDEAP
VGDDN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g10748.t67 Coils Coil Coil 72 92 -
12 g10748.t67 Coils Coil Coil 189 209 -
11 g10748.t67 Gene3D G3DSA:1.20.190.20 - 1 244 5.2E-123
2 g10748.t67 PANTHER PTHR18860 14-3-3 PROTEIN 5 242 2.9E-133
3 g10748.t67 PANTHER PTHR18860:SF7 14-3-3 PROTEIN ZETA/DELTA 5 242 2.9E-133
14 g10748.t67 PIRSF PIRSF000868 14-3-3 1 240 2.1E-114
8 g10748.t67 PRINTS PR00305 14-3-3 protein zeta signature 35 64 5.8E-85
7 g10748.t67 PRINTS PR00305 14-3-3 protein zeta signature 82 106 5.8E-85
6 g10748.t67 PRINTS PR00305 14-3-3 protein zeta signature 113 135 5.8E-85
4 g10748.t67 PRINTS PR00305 14-3-3 protein zeta signature 148 174 5.8E-85
9 g10748.t67 PRINTS PR00305 14-3-3 protein zeta signature 175 201 5.8E-85
5 g10748.t67 PRINTS PR00305 14-3-3 protein zeta signature 202 231 5.8E-85
1 g10748.t67 Pfam PF00244 14-3-3 protein 12 229 7.9E-105
15 g10748.t67 ProSitePatterns PS00796 14-3-3 proteins signature 1. 41 51 -
16 g10748.t67 ProSitePatterns PS00797 14-3-3 proteins signature 2. 211 230 -
17 g10748.t67 SMART SM00101 1433_4 6 242 5.8E-143
10 g10748.t67 SUPERFAMILY SSF48445 14-3-3 protein 5 231 1.83E-101

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed