Gene loci information

Transcript annotation

  • This transcript has been annotated as 14-3-3 protein zeta.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10748 g10748.t7 TSS g10748.t7 11685100 11685100
chr_1 g10748 g10748.t7 isoform g10748.t7 11685107 11692644
chr_1 g10748 g10748.t7 exon g10748.t7.exon1 11685107 11685188
chr_1 g10748 g10748.t7 exon g10748.t7.exon2 11691232 11691367
chr_1 g10748 g10748.t7 exon g10748.t7.exon3 11691424 11691513
chr_1 g10748 g10748.t7 cds g10748.t7.CDS1 11691452 11691513
chr_1 g10748 g10748.t7 exon g10748.t7.exon4 11691725 11691838
chr_1 g10748 g10748.t7 cds g10748.t7.CDS2 11691725 11691838
chr_1 g10748 g10748.t7 exon g10748.t7.exon5 11691899 11692025
chr_1 g10748 g10748.t7 cds g10748.t7.CDS3 11691899 11692025
chr_1 g10748 g10748.t7 exon g10748.t7.exon6 11692186 11692309
chr_1 g10748 g10748.t7 cds g10748.t7.CDS4 11692186 11692309
chr_1 g10748 g10748.t7 exon g10748.t7.exon7 11692597 11692644
chr_1 g10748 g10748.t7 cds g10748.t7.CDS5 11692597 11692643
chr_1 g10748 g10748.t7 TTS g10748.t7 NA NA

Sequences

>g10748.t7 Gene=g10748 Length=721
CGAAATTTTCTCAACTCGGATTAGTGACTCTGTAGATTTTCGTGCCATTATACAGATTTT
TACGCCTTTTCAAAAGTTAAAAGGTTTAGAGAAAGCGACTTCGACAGTTCCCAGGTCAGG
AATAAAAGAGAGTTTAGTCAACCACAGGAGTTTATAATCTTCCCATAAACCACACACCAT
ACACATTATATAGTCAAAACTCATCCCCAGATCCTAGAGAAACACACATAAAAATCAGAA
GCAAATATGTCAACCGTTGATAAAGAAGAACTTGTCCAGAAAGCAAAACTTGCTGAACAG
TCTGAAAGATATGATGATATGGCACAAGCCATGAAATCTGTCACAGAAACAGGCGTAGAG
CTCTCAAATGAAGAACGAAATTTACTGTCAGTTGCTTACAAAAATGTAGTCGGAGCCAGA
CGATCATCATGGCGTGTAATTTCATCAATTGAACAAAAAACCGAATCCTCAGCTCGAAAG
CAACAGTTGGCCCGAGAATACAGAGAGCGTGTTGAAAAAGAGCTTAGGGAAATTTGTTAT
GAAGTGCTGGGACTTTTGGATAAATTTTTAATTCCCAAAGCCAGTAATCCAGAAAGTAAA
GTCTTCTACTTGAAAATGAAAGGCGATTACTACAGATATTTAGCAGAAGTTGCTACCGGT
GAAACACGCAACTCCGTAGTTGATGACTCACAAGCAGCATACCAAGATGCATTTGAGATT
A

>g10748.t7 Gene=g10748 Length=158
MSTVDKEELVQKAKLAEQSERYDDMAQAMKSVTETGVELSNEERNLLSVAYKNVVGARRS
SWRVISSIEQKTESSARKQQLAREYRERVEKELREICYEVLGLLDKFLIPKASNPESKVF
YLKMKGDYYRYLAEVATGETRNSVVDDSQAAYQDAFEI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g10748.t7 Coils Coil Coil 75 95 -
9 g10748.t7 Gene3D G3DSA:1.20.190.20 - 1 158 5.0E-74
2 g10748.t7 PANTHER PTHR18860 14-3-3 PROTEIN 5 158 1.8E-78
3 g10748.t7 PANTHER PTHR18860:SF7 14-3-3 PROTEIN ZETA/DELTA 5 158 1.8E-78
6 g10748.t7 PRINTS PR00305 14-3-3 protein zeta signature 38 67 2.5E-39
7 g10748.t7 PRINTS PR00305 14-3-3 protein zeta signature 85 109 2.5E-39
5 g10748.t7 PRINTS PR00305 14-3-3 protein zeta signature 116 138 2.5E-39
4 g10748.t7 PRINTS PR00305 14-3-3 protein zeta signature 151 158 2.5E-39
1 g10748.t7 Pfam PF00244 14-3-3 protein 12 158 4.8E-62
11 g10748.t7 ProSitePatterns PS00796 14-3-3 proteins signature 1. 44 54 -
12 g10748.t7 SMART SM00101 1433_4 6 158 1.3E-38
8 g10748.t7 SUPERFAMILY SSF48445 14-3-3 protein 5 158 3.92E-63

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values