Gene loci information

Transcript annotation

  • This transcript has been annotated as 14-3-3 protein zeta.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10748 g10748.t72 isoform g10748.t72 11688846 11695188
chr_1 g10748 g10748.t72 exon g10748.t72.exon1 11688846 11689364
chr_1 g10748 g10748.t72 exon g10748.t72.exon2 11691232 11691367
chr_1 g10748 g10748.t72 exon g10748.t72.exon3 11691424 11691513
chr_1 g10748 g10748.t72 cds g10748.t72.CDS1 11691452 11691513
chr_1 g10748 g10748.t72 exon g10748.t72.exon4 11691725 11691838
chr_1 g10748 g10748.t72 cds g10748.t72.CDS2 11691725 11691838
chr_1 g10748 g10748.t72 exon g10748.t72.exon5 11691899 11692025
chr_1 g10748 g10748.t72 cds g10748.t72.CDS3 11691899 11692025
chr_1 g10748 g10748.t72 exon g10748.t72.exon6 11692186 11692294
chr_1 g10748 g10748.t72 cds g10748.t72.CDS4 11692186 11692294
chr_1 g10748 g10748.t72 exon g10748.t72.exon7 11693133 11693296
chr_1 g10748 g10748.t72 cds g10748.t72.CDS5 11693133 11693296
chr_1 g10748 g10748.t72 exon g10748.t72.exon8 11694727 11695188
chr_1 g10748 g10748.t72 cds g10748.t72.CDS6 11694727 11694882
chr_1 g10748 g10748.t72 TTS g10748.t72 11695497 11695497
chr_1 g10748 g10748.t72 TSS g10748.t72 NA NA

Sequences

>g10748.t72 Gene=g10748 Length=1721
AGTATCATTTTTACTGTTGATTCGATAAGTTCTAGTTGGACTCTTTGTGGTTGAAAAAGT
GCCATTCTGGAAATATTTTTCTTTGAAATTCAGTAAAATATAGTAAAGAAAGTAGAAAAA
ATCTTACATTCACGTCTTTAACATTCATTCACACGTTATCAATTACATTTGCGCGCGCGT
TAATTGATTAATAAGCCAAAAAAATTGTTGACTTGTGCTAATTTTATTTTAAAAAAATTC
GAATCAATAAGACGTTTCAAAAATTGATTTTCTCATCTCTGAGTCATATAGAGACTTTTT
GCACACAGTGGAAACTCGCATTTTACCACATTGATATTTTTTTATATATATATTATGTGC
TTCAACACGTCGTAATTAAAAGAAGCAGACGAGAGTGATAGTTAAAGAAAAAAAGATTTT
TAAATAGCTGTGAAATATTTTTTTAGATTAGTATTTCGATAAAAGAAGGAATACGATATA
TTTGCATTAAAGTGGATAAAAATAACGTTTTAATATCAGGGTTTAGAGAAAGCGACTTCG
ACAGTTCCCAGGTCAGGAATAAAAGAGAGTTTAGTCAACCACAGGAGTTTATAATCTTCC
CATAAACCACACACCATACACATTATATAGTCAAAACTCATCCCCAGATCCTAGAGAAAC
ACACATAAAAATCAGAAGCAAATATGTCAACCGTTGATAAAGAAGAACTTGTCCAGAAAG
CAAAACTTGCTGAACAGTCTGAAAGATATGATGATATGGCACAAGCCATGAAATCTGTCA
CAGAAACAGGCGTAGAGCTCTCAAATGAAGAACGAAATTTACTGTCAGTTGCTTACAAAA
ATGTAGTCGGAGCCAGACGATCATCATGGCGTGTAATTTCATCAATTGAACAAAAAACCG
AATCCTCAGCTCGAAAGCAACAGTTGGCCCGAGAATACAGAGAGCGTGTTGAAAAAGAGC
TTAGGGAAATTTGTTATGAAGTGCTGGGACTTTTGGATAAATTTTTAATTCCCAAAGCCA
GTAATCCAGAAAGTAAAGTCTTCTACTTGAAAATGAAAGGCGATTACTACAGATATTTAG
CAGAAGTTGCTACCGCTGTTGTTGAAGATTCCCAGAAAGCCTATCAAGACGCCTTCGATA
TTGCAAAGAATGACATGCAGCCTACACATCCTATTCGTTTGGGTTTGGCATTAAATTTCT
CTGTGTTTTACTATGAAATTCTGAGTAGTCCAGAGAAAGCCTGCCAGCTAGCAAAACAGG
CTTTCGATGACGCTATCGCAGAATTGGACACACTAAATGAGGACTCATATAAAGATTCAA
CCCTTATCATGCAGCTGTTGAGAGATAACCTTACTTTATGGACATCTGATACGCAAGGGG
ACGGTGATGAAGCACCAGTTGGAGATGATAACTAACCAAACTAAATTATCACAAATTCGA
GATGATAATGAAACAACTAAAACAAATTTAAATAAGATAATTTTGCGTCGCAGAGAGAAA
AAATCGATTAATGCAGTTATATAAAATATATTTTTTTTCTTCGATTTAAATTGAGTCAAC
TGAAGAAAAGATTCTTTTTTATTATATAAAACAAATACGCGCAGTTTTATAAGAGAAAGT
TATTAAATGTATTCCTTATTATTTTTCTCTTGATTCATTTGTTCTTTTCTTAATTTATTA
TTATAATTGTCTTCAAAAGCGCTTTTATCAGGATAATAAAA

>g10748.t72 Gene=g10748 Length=243
MSTVDKEELVQKAKLAEQSERYDDMAQAMKSVTETGVELSNEERNLLSVAYKNVVGARRS
SWRVISSIEQKTESSARKQQLAREYRERVEKELREICYEVLGLLDKFLIPKASNPESKVF
YLKMKGDYYRYLAEVATAVVEDSQKAYQDAFDIAKNDMQPTHPIRLGLALNFSVFYYEIL
SSPEKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDEAPVG
DDN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g10748.t72 Coils Coil Coil 75 95 -
11 g10748.t72 Coils Coil Coil 187 207 -
10 g10748.t72 Gene3D G3DSA:1.20.190.20 - 1 242 7.0E-123
2 g10748.t72 PANTHER PTHR18860 14-3-3 PROTEIN 5 240 1.2E-132
3 g10748.t72 PANTHER PTHR18860:SF7 14-3-3 PROTEIN ZETA/DELTA 5 240 1.2E-132
13 g10748.t72 PIRSF PIRSF000868 14-3-3 1 238 2.2E-114
5 g10748.t72 PRINTS PR00305 14-3-3 protein zeta signature 38 67 4.7E-70
7 g10748.t72 PRINTS PR00305 14-3-3 protein zeta signature 85 109 4.7E-70
6 g10748.t72 PRINTS PR00305 14-3-3 protein zeta signature 146 172 4.7E-70
4 g10748.t72 PRINTS PR00305 14-3-3 protein zeta signature 173 199 4.7E-70
8 g10748.t72 PRINTS PR00305 14-3-3 protein zeta signature 200 229 4.7E-70
1 g10748.t72 Pfam PF00244 14-3-3 protein 12 227 1.4E-103
14 g10748.t72 ProSitePatterns PS00796 14-3-3 proteins signature 1. 44 54 -
15 g10748.t72 ProSitePatterns PS00797 14-3-3 proteins signature 2. 209 228 -
16 g10748.t72 SMART SM00101 1433_4 6 240 2.4E-142
9 g10748.t72 SUPERFAMILY SSF48445 14-3-3 protein 5 229 3.92E-102

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values