General information for g10748.t88
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as 14-3-3 protein zeta.
Parent gene
- The parent gene g10748 is located on chr_1: 11694759..11696924 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10748 | g10748.t88 | TSS | g10748.t88 | 11691231 | 11691231 |
| chr_1 | g10748 | g10748.t88 | isoform | g10748.t88 | 11691452 | 11695500 |
| chr_1 | g10748 | g10748.t88 | exon | g10748.t88.exon1 | 11691452 | 11691543 |
| chr_1 | g10748 | g10748.t88 | exon | g10748.t88.exon2 | 11691877 | 11692025 |
| chr_1 | g10748 | g10748.t88 | exon | g10748.t88.exon3 | 11692186 | 11692309 |
| chr_1 | g10748 | g10748.t88 | cds | g10748.t88.CDS1 | 11692252 | 11692309 |
| chr_1 | g10748 | g10748.t88 | exon | g10748.t88.exon4 | 11693133 | 11693296 |
| chr_1 | g10748 | g10748.t88 | cds | g10748.t88.CDS2 | 11693133 | 11693296 |
| chr_1 | g10748 | g10748.t88 | exon | g10748.t88.exon5 | 11694727 | 11695500 |
| chr_1 | g10748 | g10748.t88 | cds | g10748.t88.CDS3 | 11694727 | 11694882 |
| chr_1 | g10748 | g10748.t88 | TTS | g10748.t88 | 11695497 | 11695497 |
Sequences
>g10748.t88 Gene=g10748 Length=1303
ATGTCAACCGTTGATAAAGAAGAACTTGTCCAGAAAGCAAAACTTGCTGAACAGTCTGAA
AGGTGATTTTCATAAAAATTCGATCTTTCAAATTAATACTCGTTGCTTCTTTAGATCATC
ATGGCGTGTAATTTCATCAATTGAACAAAAAACCGAATCCTCAGCTCGAAAGCAACAGTT
GGCCCGAGAATACAGAGAGCGTGTTGAAAAAGAGCTTAGGGAAATTTGTTATGAAGTGCT
GGGACTTTTGGATAAATTTTTAATTCCCAAAGCCAGTAATCCAGAAAGTAAAGTCTTCTA
CTTGAAAATGAAAGGCGATTACTACAGATATTTAGCAGAAGTTGCTACCGGTGAAACACG
CAACTCTGTTGTTGAAGATTCCCAGAAAGCCTATCAAGACGCCTTCGATATTGCAAAGAA
TGACATGCAGCCTACACATCCTATTCGTTTGGGTTTGGCATTAAATTTCTCTGTGTTTTA
CTATGAAATTCTGAGTAGTCCAGAGAAAGCCTGCCAGCTAGCAAAACAGGCTTTCGATGA
CGCTATCGCAGAATTGGACACACTAAATGAGGACTCATATAAAGATTCAACCCTTATCAT
GCAGCTGTTGAGAGATAACCTTACTTTATGGACATCTGATACGCAAGGGGACGGTGATGA
AGCACCAGTTGGAGATGATAACTAACCAAACTAAATTATCACAAATTCGAGATGATAATG
AAACAACTAAAACAAATTTAAATAAGATAATTTTGCGTCGCAGAGAGAAAAAATCGATTA
ATGCAGTTATATAAAATATATTTTTTTTCTTCGATTTAAATTGAGTCAACTGAAGAAAAG
ATTCTTTTTTATTATATAAAACAAATACGCGCAGTTTTATAAGAGAAAGTTATTAAATGT
ATTCCTTATTATTTTTCTCTTGATTCATTTGTTCTTTTCTTAATTTATTATTATAATTGT
CTTCAAAAGCGCTTTTATCAGGATAATAAAAACACAAACACAGACACTTAGATATTGATT
GATATCAGTCTTCGAAAACAGCAAAAATAAACACGTATAAGAATTACGAAGAAAGCTTTT
TTATAGAATCAAAAAAAACCAGAGTGTGGACCTCATTCAACAACAACCGACTACCGCTGA
CACACTCTTTAATTCAGAGAAGAACTGCAAAAAAATTTATTTCATTTTAATTTTTAACAT
CCAATTGATAGTCATTTATATTTTCTGTTGAACATATTATTTGCTTTTGGATTTTTGTCA
TTTTAAAACAAAAAAGAATAAAACTTTACATTACACAACCAAA
>g10748.t88 Gene=g10748 Length=125
MKGDYYRYLAEVATGETRNSVVEDSQKAYQDAFDIAKNDMQPTHPIRLGLALNFSVFYYE
ILSSPEKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDEAP
VGDDN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g10748.t88 | Coils | Coil | Coil | 69 | 89 | - |
| 8 | g10748.t88 | Gene3D | G3DSA:1.20.190.20 | - | 1 | 125 | 3.1E-63 |
| 2 | g10748.t88 | PANTHER | PTHR18860 | 14-3-3 PROTEIN | 1 | 122 | 5.8E-68 |
| 3 | g10748.t88 | PANTHER | PTHR18860:SF7 | 14-3-3 PROTEIN ZETA/DELTA | 1 | 122 | 5.8E-68 |
| 6 | g10748.t88 | PRINTS | PR00305 | 14-3-3 protein zeta signature | 28 | 54 | 1.0E-42 |
| 4 | g10748.t88 | PRINTS | PR00305 | 14-3-3 protein zeta signature | 55 | 81 | 1.0E-42 |
| 5 | g10748.t88 | PRINTS | PR00305 | 14-3-3 protein zeta signature | 82 | 111 | 1.0E-42 |
| 1 | g10748.t88 | Pfam | PF00244 | 14-3-3 protein | 1 | 109 | 6.7E-57 |
| 10 | g10748.t88 | ProSitePatterns | PS00797 | 14-3-3 proteins signature 2. | 91 | 110 | - |
| 11 | g10748.t88 | SMART | SM00101 | 1433_4 | 1 | 122 | 3.0E-27 |
| 7 | g10748.t88 | SUPERFAMILY | SSF48445 | 14-3-3 protein | 1 | 117 | 7.85E-56 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
