Gene loci information

Transcript annotation

  • This transcript has been annotated as 14-3-3 protein zeta.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10748 g10748.t9 TSS g10748.t9 11685100 11685100
chr_1 g10748 g10748.t9 isoform g10748.t9 11685107 11693300
chr_1 g10748 g10748.t9 exon g10748.t9.exon1 11685107 11685188
chr_1 g10748 g10748.t9 exon g10748.t9.exon2 11691232 11691513
chr_1 g10748 g10748.t9 cds g10748.t9.CDS1 11691452 11691513
chr_1 g10748 g10748.t9 exon g10748.t9.exon3 11691725 11691838
chr_1 g10748 g10748.t9 cds g10748.t9.CDS2 11691725 11691838
chr_1 g10748 g10748.t9 exon g10748.t9.exon4 11691899 11692025
chr_1 g10748 g10748.t9 cds g10748.t9.CDS3 11691899 11692025
chr_1 g10748 g10748.t9 exon g10748.t9.exon5 11692186 11692309
chr_1 g10748 g10748.t9 cds g10748.t9.CDS4 11692186 11692309
chr_1 g10748 g10748.t9 exon g10748.t9.exon6 11693133 11693300
chr_1 g10748 g10748.t9 cds g10748.t9.CDS5 11693133 11693299
chr_1 g10748 g10748.t9 TTS g10748.t9 NA NA

Sequences

>g10748.t9 Gene=g10748 Length=897
CGAAATTTTCTCAACTCGGATTAGTGACTCTGTAGATTTTCGTGCCATTATACAGATTTT
TACGCCTTTTCAAAAGTTAAAAGGTTTAGAGAAAGCGACTTCGACAGTTCCCAGGTCAGG
AATAAAAGAGAGTTTAGTCAACCACAGGAGTTTATAATCTTCCCATAAACCACACACCAT
ACACATTATATAGTCAAAACTCATCCCCAGATCCTAGAGTAATTTTTAAGAACTGTCTTC
ATTAAAATAAAGAACTACTTCTCGAATTTTAAAGGAAACACACATAAAAATCAGAAGCAA
ATATGTCAACCGTTGATAAAGAAGAACTTGTCCAGAAAGCAAAACTTGCTGAACAGTCTG
AAAGATATGATGATATGGCACAAGCCATGAAATCTGTCACAGAAACAGGCGTAGAGCTCT
CAAATGAAGAACGAAATTTACTGTCAGTTGCTTACAAAAATGTAGTCGGAGCCAGACGAT
CATCATGGCGTGTAATTTCATCAATTGAACAAAAAACCGAATCCTCAGCTCGAAAGCAAC
AGTTGGCCCGAGAATACAGAGAGCGTGTTGAAAAAGAGCTTAGGGAAATTTGTTATGAAG
TGCTGGGACTTTTGGATAAATTTTTAATTCCCAAAGCCAGTAATCCAGAAAGTAAAGTCT
TCTACTTGAAAATGAAAGGCGATTACTACAGATATTTAGCAGAAGTTGCTACCGGTGAAA
CACGCAACTCTGTTGTTGAAGATTCCCAGAAAGCCTATCAAGACGCCTTCGATATTGCAA
AGAATGACATGCAGCCTACACATCCTATTCGTTTGGGTTTGGCATTAAATTTCTCTGTGT
TTTACTATGAAATTCTGAGTAGTCCAGAGAAAGCCTGCCAGCTAGCAAAACAGGTAC

>g10748.t9 Gene=g10748 Length=198
MSTVDKEELVQKAKLAEQSERYDDMAQAMKSVTETGVELSNEERNLLSVAYKNVVGARRS
SWRVISSIEQKTESSARKQQLAREYRERVEKELREICYEVLGLLDKFLIPKASNPESKVF
YLKMKGDYYRYLAEVATGETRNSVVEDSQKAYQDAFDIAKNDMQPTHPIRLGLALNFSVF
YYEILSSPEKACQLAKQV

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g10748.t9 Coils Coil Coil 75 95 -
10 g10748.t9 Gene3D G3DSA:1.20.190.20 - 1 198 8.9E-101
2 g10748.t9 PANTHER PTHR18860 14-3-3 PROTEIN 5 197 2.6E-106
3 g10748.t9 PANTHER PTHR18860:SF7 14-3-3 PROTEIN ZETA/DELTA 5 197 2.6E-106
6 g10748.t9 PRINTS PR00305 14-3-3 protein zeta signature 38 67 7.7E-65
7 g10748.t9 PRINTS PR00305 14-3-3 protein zeta signature 85 109 7.7E-65
5 g10748.t9 PRINTS PR00305 14-3-3 protein zeta signature 116 138 7.7E-65
4 g10748.t9 PRINTS PR00305 14-3-3 protein zeta signature 151 177 7.7E-65
8 g10748.t9 PRINTS PR00305 14-3-3 protein zeta signature 178 198 7.7E-65
1 g10748.t9 Pfam PF00244 14-3-3 protein 12 197 1.2E-86
12 g10748.t9 ProSitePatterns PS00796 14-3-3 proteins signature 1. 44 54 -
13 g10748.t9 SMART SM00101 1433_4 6 197 3.5E-88
9 g10748.t9 SUPERFAMILY SSF48445 14-3-3 protein 5 197 1.44E-85

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values