General information for g10748.t90
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative 14-3-3 protein zeta.
Parent gene
- The parent gene g10748 is located on chr_1: 11694759..11696924 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10748 | g10748.t90 | TSS | g10748.t90 | 11691231 | 11691231 |
| chr_1 | g10748 | g10748.t90 | isoform | g10748.t90 | 11691452 | 11695500 |
| chr_1 | g10748 | g10748.t90 | exon | g10748.t90.exon1 | 11691452 | 11692025 |
| chr_1 | g10748 | g10748.t90 | exon | g10748.t90.exon2 | 11692186 | 11692309 |
| chr_1 | g10748 | g10748.t90 | cds | g10748.t90.CDS1 | 11692252 | 11692309 |
| chr_1 | g10748 | g10748.t90 | exon | g10748.t90.exon3 | 11693133 | 11693239 |
| chr_1 | g10748 | g10748.t90 | cds | g10748.t90.CDS2 | 11693133 | 11693239 |
| chr_1 | g10748 | g10748.t90 | exon | g10748.t90.exon4 | 11694727 | 11695500 |
| chr_1 | g10748 | g10748.t90 | cds | g10748.t90.CDS3 | 11694727 | 11694882 |
| chr_1 | g10748 | g10748.t90 | TTS | g10748.t90 | 11695497 | 11695497 |
Sequences
>g10748.t90 Gene=g10748 Length=1579
ATGTCAACCGTTGATAAAGAAGAACTTGTCCAGAAAGCAAAACTTGCTGAACAGTCTGAA
AGGTGATTTTCATAAAAATTCGATCTTTCAAAGTAGCTCTTATTATTATCAGCCTGATAT
ATATTGTCTTAAAGTGCCTTGTAGCAATATAGCCTATTGAAGGACGATAATTGTAATTTA
ATTAATTAGGCTAGAAGAAAGAAAAAAGAAAAATCTTGATAAAATATCCTCTAACCATCA
TTAAATTAATCACAAAACTTAATCAAATTTCAGATATGATGATATGGCACAAGCCATGAA
ATCTGTCACAGAAACAGGCGTAGAGCTCTCAAATGAAGAACGAAATTTACTGTCAGTTGC
TTACAAAAATGTAGTCGGAGCCAGACGGTAATTTTTAATGTTATATTTTTTACTTAAATA
AACAGTTAATACTCGTTGCTTCTTTAGATCATCATGGCGTGTAATTTCATCAATTGAACA
AAAAACCGAATCCTCAGCTCGAAAGCAACAGTTGGCCCGAGAATACAGAGAGCGTGTTGA
AAAAGAGCTTAGGGAAATTTGTTATGAAGTGCTGGGACTTTTGGATAAATTTTTAATTCC
CAAAGCCAGTAATCCAGAAAGTAAAGTCTTCTACTTGAAAATGAAAGGCGATTACTACAG
ATATTTAGCAGAAGTTGCTACCGGTGAAACACGCAACTCTGTTGTTGAAGATTCCCAGAA
AGCCTATCAAGACGCCTTCGATATTGCAAAGAATGACATGCAGCCTACACATCCTATTCG
TTTGGGTTTGGCATTAAATTTCTCTGCTTTCGATGACGCTATCGCAGAATTGGACACACT
AAATGAGGACTCATATAAAGATTCAACCCTTATCATGCAGCTGTTGAGAGATAACCTTAC
TTTATGGACATCTGATACGCAAGGGGACGGTGATGAAGCACCAGTTGGAGATGATAACTA
ACCAAACTAAATTATCACAAATTCGAGATGATAATGAAACAACTAAAACAAATTTAAATA
AGATAATTTTGCGTCGCAGAGAGAAAAAATCGATTAATGCAGTTATATAAAATATATTTT
TTTTCTTCGATTTAAATTGAGTCAACTGAAGAAAAGATTCTTTTTTATTATATAAAACAA
ATACGCGCAGTTTTATAAGAGAAAGTTATTAAATGTATTCCTTATTATTTTTCTCTTGAT
TCATTTGTTCTTTTCTTAATTTATTATTATAATTGTCTTCAAAAGCGCTTTTATCAGGAT
AATAAAAACACAAACACAGACACTTAGATATTGATTGATATCAGTCTTCGAAAACAGCAA
AAATAAACACGTATAAGAATTACGAAGAAAGCTTTTTTATAGAATCAAAAAAAACCAGAG
TGTGGACCTCATTCAACAACAACCGACTACCGCTGACACACTCTTTAATTCAGAGAAGAA
CTGCAAAAAAATTTATTTCATTTTAATTTTTAACATCCAATTGATAGTCATTTATATTTT
CTGTTGAACATATTATTTGCTTTTGGATTTTTGTCATTTTAAAACAAAAAAGAATAAAAC
TTTACATTACACAACCAAA
>g10748.t90 Gene=g10748 Length=106
MKGDYYRYLAEVATGETRNSVVEDSQKAYQDAFDIAKNDMQPTHPIRLGLALNFSAFDDA
IAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDEAPVGDDN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g10748.t90 | Gene3D | G3DSA:1.20.190.20 | - | 1 | 103 | 7.7E-44 |
| 4 | g10748.t90 | PANTHER | PTHR18860 | 14-3-3 PROTEIN | 1 | 57 | 1.7E-47 |
| 6 | g10748.t90 | PANTHER | PTHR18860:SF7 | 14-3-3 PROTEIN ZETA/DELTA | 1 | 57 | 1.7E-47 |
| 3 | g10748.t90 | PANTHER | PTHR18860 | 14-3-3 PROTEIN | 56 | 103 | 1.7E-47 |
| 5 | g10748.t90 | PANTHER | PTHR18860:SF7 | 14-3-3 PROTEIN ZETA/DELTA | 56 | 103 | 1.7E-47 |
| 2 | g10748.t90 | Pfam | PF00244 | 14-3-3 protein | 1 | 57 | 1.1E-23 |
| 1 | g10748.t90 | Pfam | PF00244 | 14-3-3 protein | 56 | 90 | 4.5E-14 |
| 9 | g10748.t90 | ProSitePatterns | PS00797 | 14-3-3 proteins signature 2. | 72 | 91 | - |
| 8 | g10748.t90 | SMART | SM00101 | 1433_4 | 1 | 103 | 6.7E-8 |
| 7 | g10748.t90 | SUPERFAMILY | SSF48445 | 14-3-3 protein | 1 | 98 | 6.15E-41 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed