Gene loci information

Transcript annotation

  • This transcript has been annotated as 14-3-3 protein zeta.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10748 g10748.t93 TSS g10748.t93 11691231 11691231
chr_1 g10748 g10748.t93 isoform g10748.t93 11691727 11694882
chr_1 g10748 g10748.t93 exon g10748.t93.exon1 11691727 11691838
chr_1 g10748 g10748.t93 exon g10748.t93.exon2 11691899 11692029
chr_1 g10748 g10748.t93 cds g10748.t93.CDS1 11692015 11692029
chr_1 g10748 g10748.t93 exon g10748.t93.exon3 11692186 11692309
chr_1 g10748 g10748.t93 cds g10748.t93.CDS2 11692186 11692309
chr_1 g10748 g10748.t93 exon g10748.t93.exon4 11693133 11693296
chr_1 g10748 g10748.t93 cds g10748.t93.CDS3 11693133 11693296
chr_1 g10748 g10748.t93 exon g10748.t93.exon5 11694727 11694882
chr_1 g10748 g10748.t93 cds g10748.t93.CDS4 11694727 11694882
chr_1 g10748 g10748.t93 TTS g10748.t93 11695497 11695497

Sequences

>g10748.t93 Gene=g10748 Length=687
ATGATGATATGGCACAAGCCATGAAATCTGTCACAGAAACAGGCGTAGAGCTCTCAAATG
AAGAACGAAATTTACTGTCAGTTGCTTACAAAAATGTAGTCGGAGCCAGACGATCATCAT
GGCGTGTAATTTCATCAATTGAACAAAAAACCGAATCCTCAGCTCGAAAGCAACAGTTGG
CCCGAGAATACAGAGAGCGTGTTGAAAAAGAGCTTAGGGAAATTTGTTATGAAGTGCTGG
TATGGACTTTTGGATAAATTTTTAATTCCCAAAGCCAGTAATCCAGAAAGTAAAGTCTTC
TACTTGAAAATGAAAGGCGATTACTACAGATATTTAGCAGAAGTTGCTACCGGTGAAACA
CGCAACTCTGTTGTTGAAGATTCCCAGAAAGCCTATCAAGACGCCTTCGATATTGCAAAG
AATGACATGCAGCCTACACATCCTATTCGTTTGGGTTTGGCATTAAATTTCTCTGTGTTT
TACTATGAAATTCTGAGTAGTCCAGAGAAAGCCTGCCAGCTAGCAAAACAGGCTTTCGAT
GACGCTATCGCAGAATTGGACACACTAAATGAGGACTCATATAAAGATTCAACCCTTATC
ATGCAGCTGTTGAGAGATAACCTTACTTTATGGACATCTGATACGCAAGGGGACGGTGAT
GAAGCACCAGTTGGAGATGATAACTAA

>g10748.t93 Gene=g10748 Length=152
MKCWYGLLDKFLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRNSVVEDSQKAYQDAF
DIAKNDMQPTHPIRLGLALNFSVFYYEILSSPEKACQLAKQAFDDAIAELDTLNEDSYKD
STLIMQLLRDNLTLWTSDTQGDGDEAPVGDDN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g10748.t93 Coils Coil Coil 96 116 -
9 g10748.t93 Gene3D G3DSA:1.20.190.20 - 3 152 3.4E-75
2 g10748.t93 PANTHER PTHR18860 14-3-3 PROTEIN 6 149 2.2E-80
3 g10748.t93 PANTHER PTHR18860:SF7 14-3-3 PROTEIN ZETA/DELTA 6 149 2.2E-80
5 g10748.t93 PRINTS PR00305 14-3-3 protein zeta signature 20 42 7.9E-58
4 g10748.t93 PRINTS PR00305 14-3-3 protein zeta signature 55 81 7.9E-58
7 g10748.t93 PRINTS PR00305 14-3-3 protein zeta signature 82 108 7.9E-58
6 g10748.t93 PRINTS PR00305 14-3-3 protein zeta signature 109 138 7.9E-58
1 g10748.t93 Pfam PF00244 14-3-3 protein 6 136 1.1E-67
11 g10748.t93 ProSitePatterns PS00797 14-3-3 proteins signature 2. 118 137 -
12 g10748.t93 SMART SM00101 1433_4 1 149 1.1E-52
8 g10748.t93 SUPERFAMILY SSF48445 14-3-3 protein 5 144 1.09E-66

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed