Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative 14-3-3 protein zeta.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10748 g10748.t94 TSS g10748.t94 11691231 11691231
chr_1 g10748 g10748.t94 isoform g10748.t94 11691898 11695500
chr_1 g10748 g10748.t94 exon g10748.t94.exon1 11691898 11692025
chr_1 g10748 g10748.t94 exon g10748.t94.exon2 11692186 11692309
chr_1 g10748 g10748.t94 cds g10748.t94.CDS1 11692252 11692309
chr_1 g10748 g10748.t94 exon g10748.t94.exon3 11693696 11693832
chr_1 g10748 g10748.t94 cds g10748.t94.CDS2 11693696 11693832
chr_1 g10748 g10748.t94 exon g10748.t94.exon4 11694714 11695500
chr_1 g10748 g10748.t94 cds g10748.t94.CDS3 11694714 11694737
chr_1 g10748 g10748.t94 TTS g10748.t94 11695497 11695497

Sequences

>g10748.t94 Gene=g10748 Length=1176
GATCATCATGGCGTGTAATTTCATCAATTGAACAAAAAACCGAATCCTCAGCTCGAAAGC
AACAGTTGGCCCGAGAATACAGAGAGCGTGTTGAAAAAGAGCTTAGGGAAATTTGTTATG
AAGTGCTGGGACTTTTGGATAAATTTTTAATTCCCAAAGCCAGTAATCCAGAAAGTAAAG
TCTTCTACTTGAAAATGAAAGGCGATTACTACAGATATTTAGCAGAAGTTGCTACCGGTG
AAACACGCAACTCCGTTGTTGATGATTCTCAAAAAGCTTATCAGGAAGCTTTTGATATCG
CCAAAACCAAAATGCAGCCAACACATCCAATTCGCTTAGGTCTCGCACTTAATTTCTCAG
TATTTTACTACGAGATAATCAGTTCACCTAAAATCAATAAAGGCTTTCGATGACGCTATC
GCAGAATTGGACACACTAAATGAGGACTCATATAAAGATTCAACCCTTATCATGCAGCTG
TTGAGAGATAACCTTACTTTATGGACATCTGATACGCAAGGGGACGGTGATGAAGCACCA
GTTGGAGATGATAACTAACCAAACTAAATTATCACAAATTCGAGATGATAATGAAACAAC
TAAAACAAATTTAAATAAGATAATTTTGCGTCGCAGAGAGAAAAAATCGATTAATGCAGT
TATATAAAATATATTTTTTTTCTTCGATTTAAATTGAGTCAACTGAAGAAAAGATTCTTT
TTTATTATATAAAACAAATACGCGCAGTTTTATAAGAGAAAGTTATTAAATGTATTCCTT
ATTATTTTTCTCTTGATTCATTTGTTCTTTTCTTAATTTATTATTATAATTGTCTTCAAA
AGCGCTTTTATCAGGATAATAAAAACACAAACACAGACACTTAGATATTGATTGATATCA
GTCTTCGAAAACAGCAAAAATAAACACGTATAAGAATTACGAAGAAAGCTTTTTTATAGA
ATCAAAAAAAACCAGAGTGTGGACCTCATTCAACAACAACCGACTACCGCTGACACACTC
TTTAATTCAGAGAAGAACTGCAAAAAAATTTATTTCATTTTAATTTTTAACATCCAATTG
ATAGTCATTTATATTTTCTGTTGAACATATTATTTGCTTTTGGATTTTTGTCATTTTAAA
ACAAAAAAGAATAAAACTTTACATTACACAACCAAA

>g10748.t94 Gene=g10748 Length=72
MKGDYYRYLAEVATGETRNSVVDDSQKAYQEAFDIAKTKMQPTHPIRLGLALNFSVFYYE
IISSPKINKGFR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g10748.t94 Gene3D G3DSA:1.20.190.20 - 1 67 0
2 g10748.t94 PANTHER PTHR18860 14-3-3 PROTEIN 1 66 0
3 g10748.t94 PANTHER PTHR18860:SF7 14-3-3 PROTEIN ZETA/DELTA 1 66 0
5 g10748.t94 PRINTS PR00305 14-3-3 protein zeta signature 28 54 0
4 g10748.t94 PRINTS PR00305 14-3-3 protein zeta signature 55 72 0
1 g10748.t94 Pfam PF00244 14-3-3 protein 1 66 0
6 g10748.t94 SUPERFAMILY SSF48445 14-3-3 protein 1 66 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed