Gene loci information

Transcript annotation

  • This transcript has been annotated as ATP-dependent 6-phosphofructokinase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10749 g10749.t1 TSS g10749.t1 11697838 11697838
chr_1 g10749 g10749.t1 isoform g10749.t1 11698227 11705014
chr_1 g10749 g10749.t1 exon g10749.t1.exon1 11698227 11698376
chr_1 g10749 g10749.t1 cds g10749.t1.CDS1 11698227 11698376
chr_1 g10749 g10749.t1 exon g10749.t1.exon2 11699190 11699686
chr_1 g10749 g10749.t1 cds g10749.t1.CDS2 11699190 11699686
chr_1 g10749 g10749.t1 exon g10749.t1.exon3 11701464 11701572
chr_1 g10749 g10749.t1 cds g10749.t1.CDS3 11701464 11701572
chr_1 g10749 g10749.t1 exon g10749.t1.exon4 11702119 11702271
chr_1 g10749 g10749.t1 cds g10749.t1.CDS4 11702119 11702271
chr_1 g10749 g10749.t1 exon g10749.t1.exon5 11702336 11702371
chr_1 g10749 g10749.t1 cds g10749.t1.CDS5 11702336 11702371
chr_1 g10749 g10749.t1 exon g10749.t1.exon6 11702435 11702442
chr_1 g10749 g10749.t1 cds g10749.t1.CDS6 11702435 11702442
chr_1 g10749 g10749.t1 exon g10749.t1.exon7 11702510 11703784
chr_1 g10749 g10749.t1 cds g10749.t1.CDS7 11702510 11703784
chr_1 g10749 g10749.t1 exon g10749.t1.exon8 11703841 11703919
chr_1 g10749 g10749.t1 cds g10749.t1.CDS8 11703841 11703919
chr_1 g10749 g10749.t1 exon g10749.t1.exon9 11704033 11704042
chr_1 g10749 g10749.t1 cds g10749.t1.CDS9 11704033 11704042
chr_1 g10749 g10749.t1 exon g10749.t1.exon10 11704977 11705014
chr_1 g10749 g10749.t1 cds g10749.t1.CDS10 11704977 11705014
chr_1 g10749 g10749.t1 TTS g10749.t1 11705572 11705572

Sequences

>g10749.t1 Gene=g10749 Length=2355
ATGTCTAATAACGATGACGTTCAAAGATTTATCGGTCGTGGAAGTCGAAAAGGACATGGA
ATTGCTGTATTCACTAGTGGAGGTGACTCTCAGGGTATGAATGCTGCTGTACGTGCTGTT
GTTCGCATGGGAATTTACTTAGGATGCAAGGTTTATTTCATCAAAGAGGGTTACCAAGGA
ATGGTTGATGGAGGTGAAAATATTGTAGAAGCAAATTGGGCATCTGTATCGAGTATCATT
CATCGTGGAGGAACTGTTATTGGTTCAGCACGTTGTAAGGATTTTCGTGAACGTCCAGGA
CGTTTGAAGGCTGCTGAGAATCTCATTAAACGTGGAATCACAAATTTGGTCGTTATTGGC
GGTGATGGTTCATTAACTGGTGCTAATTTGTTCCGCGTTGAATGGAGTAGCTTATTAGAC
GAGTTACTGTCAACTGGAAGAATTTCAACTGAAGAACGTCAAAAATATAAGAGCTTACAT
ATCGCTGGTATGGTTGGATCGATTGATAACGATTTTTGCGGTACTGACATGACAATTGGT
ACCGATTCTGCTTTACATCGTATTATCGAGGCTATTGATGCTATTGTTAGTACTGCATAT
TCGCATCAGCGTACATTTATCATGGAAGTCATGGGAAGACACTGTGGTTACTTAGCTGTA
GTCGCTGCGCTTGCTTCAGAAGCTGACTACGTATTTATACCTGAGGATCCTGTCAACGTT
CACTGGAAAGAGAATCTGTGCAAAAAATTACTTCAGGAACGTTCTGCTGGTCAGCGTTTA
AACATTATAATTGTTGCTGAAGGAGCTATTGATCGTGAAGGTAATCCTATTACAGCTGAA
ATGGTTAAGAAAGTAGTCGTTGATGAATTGAAACAAGACACAAGAATCACTGTTTTGGGT
CATGTACAGAGAGGAGGAAATCCTTCAGCTTTCGATCGTGTTTTGGGTTGCCGCATGGGC
GCAGAAGCTGTTATGGCTTTGATGGAAGCAACAGATGACACTGAACCTTGTGTCGTTTCA
TTAGACGGCAATCAAGCTGTTCGTCTCCCACTTATGGAATGTGTTAATCGCACACAAGCT
GTAGCTAAAGCCATGGCTGAACGTAAATTTGAATTAGCTGTTGACCTTCGTGGACGTTCA
TTTGCAAGAAATTTAGAGACATACAAAATGTTGACTCGCTTGAAGCCACCAAAAGAAGCT
TTTGATGCTGAAGGTCGTGGAAAAGAAGGGTACACTCTTGCTGTTATGCATATCGGTGCA
CCAGCTTGTGGAATGAATGCAGCAGTTCGTTCATTTGTTCGTAATTCAATTTATCGAGGT
GATACTGTTTATGGTATTCACGACGGAATTGAAGGATTGGTTGCAGGACATTTTACAAAA
ATGGATTGGGCTGATGTCACTGGCTGGGTTGGACAAGGTGGTGCTTTTCTTGGAACAAAA
CGTACACTTCCAGAAGGAAAGTTCAAGGAAATCGCTCAAAGATTCCGTGAATTTGGTATT
CAAGGTTTGCTTGTCGTTGGTGGTTTCGAAGGCTATCATTCATTGGGACAACTTGTCGAT
CAACGTGACAATTATCCAGAATTTTGTATCCCAATGATCATTATTCCATCAACTATTTCA
AATAATGTTCCTGGAACTGAATTTTCACTTGGTGCTGATACTGGTCTAAACGAAATCACC
GAAATTTGTGATCGTATTCGTCAATCAGCACAAGGTACAAAACGACGTGTTTTCGTCATT
GAAACTATGGGAGGCTATTGCGGATATTTGGCAACATTAGCTGGTCTTGCTGGTGGTGCA
GATGCTGCATACATCTATGAAGAGAAATTTTCTATTAAGGATTTGCAACAAGATGTCTAT
CATATGGCATCAAAAATGGCTGATGGCGTTCAGCGTGGTCTTATCTTGAGAAATGAAAAG
GCAAATGACAACTACAACACTGATTTCATTCATCGTCTTTATTCAGAGGAAGGCAAAGGA
CTTTTCTCCTGTCGTTCAAATATTCTTGGCCATATGCAACAAGGTGGTTCACCAACACCT
TTCGATCGTAATATGGGTACAAAAATGGCAGCAAAAGCTGTAGAGTGGCTTGCAACACAA
ATCAAAGAAAATACGAAAGATGGAAAACTTTATGCATCAGCACCAGATACCGCATGTTTG
TTGGGTCTCGTTAGACGTCAATATAAATTCTCACCATTGAAAGAGCTTATTGCTGACACT
AATTTTGAACAACGTATTCCTAAAACTCAATGGTGGCTCAAACTTAGACCTTTGTTGCGT
ATTCTCGCTAAGCATGATTCTACTTATGAGGAAGAAGATTTCGTCGCTAATATGGCCGCA
ATAAAGAGTCTTTAA

>g10749.t1 Gene=g10749 Length=784
MSNNDDVQRFIGRGSRKGHGIAVFTSGGDSQGMNAAVRAVVRMGIYLGCKVYFIKEGYQG
MVDGGENIVEANWASVSSIIHRGGTVIGSARCKDFRERPGRLKAAENLIKRGITNLVVIG
GDGSLTGANLFRVEWSSLLDELLSTGRISTEERQKYKSLHIAGMVGSIDNDFCGTDMTIG
TDSALHRIIEAIDAIVSTAYSHQRTFIMEVMGRHCGYLAVVAALASEADYVFIPEDPVNV
HWKENLCKKLLQERSAGQRLNIIIVAEGAIDREGNPITAEMVKKVVVDELKQDTRITVLG
HVQRGGNPSAFDRVLGCRMGAEAVMALMEATDDTEPCVVSLDGNQAVRLPLMECVNRTQA
VAKAMAERKFELAVDLRGRSFARNLETYKMLTRLKPPKEAFDAEGRGKEGYTLAVMHIGA
PACGMNAAVRSFVRNSIYRGDTVYGIHDGIEGLVAGHFTKMDWADVTGWVGQGGAFLGTK
RTLPEGKFKEIAQRFREFGIQGLLVVGGFEGYHSLGQLVDQRDNYPEFCIPMIIIPSTIS
NNVPGTEFSLGADTGLNEITEICDRIRQSAQGTKRRVFVIETMGGYCGYLATLAGLAGGA
DAAYIYEEKFSIKDLQQDVYHMASKMADGVQRGLILRNEKANDNYNTDFIHRLYSEEGKG
LFSCRSNILGHMQQGGSPTPFDRNMGTKMAAKAVEWLATQIKENTKDGKLYASAPDTACL
LGLVRRQYKFSPLKELIADTNFEQRIPKTQWWLKLRPLLRILAKHDSTYEEEDFVANMAA
IKSL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
18 g10749.t1 Gene3D G3DSA:3.40.50.450 - 21 364 1.7E-185
17 g10749.t1 Gene3D G3DSA:3.40.50.460 - 184 389 1.7E-185
19 g10749.t1 Gene3D G3DSA:3.40.50.450 - 413 742 3.0E-162
16 g10749.t1 Gene3D G3DSA:3.40.50.460 - 554 759 3.0E-162
4 g10749.t1 Hamap MF_03184 ATP-dependent 6-phosphofructokinase. 19 769 41.723068
3 g10749.t1 PANTHER PTHR13697 PHOSPHOFRUCTOKINASE 15 768 0.0
20 g10749.t1 PIRSF PIRSF000533 ATP_PFK_euk 2 773 0.0
5 g10749.t1 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 23 42 7.3E-90
8 g10749.t1 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 48 61 7.3E-90
9 g10749.t1 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 112 128 7.3E-90
10 g10749.t1 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 162 179 7.3E-90
6 g10749.t1 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 180 198 7.3E-90
7 g10749.t1 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 200 216 7.3E-90
11 g10749.t1 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 218 235 7.3E-90
13 g10749.t1 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 257 269 7.3E-90
12 g10749.t1 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 291 313 7.3E-90
1 g10749.t1 Pfam PF00365 Phosphofructokinase 21 326 1.6E-107
2 g10749.t1 Pfam PF00365 Phosphofructokinase 413 697 3.7E-90
21 g10749.t1 ProSitePatterns PS00433 Phosphofructokinase signature. 295 313 -
22 g10749.t1 ProSitePatterns PS00433 Phosphofructokinase signature. 665 683 -
15 g10749.t1 SUPERFAMILY SSF53784 Phosphofructokinase 18 356 6.54E-105
14 g10749.t1 SUPERFAMILY SSF53784 Phosphofructokinase 342 779 4.05E-108
23 g10749.t1 TIGRFAM TIGR02478 6PF1K_euk: 6-phosphofructokinase 20 766 0.0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003872 6-phosphofructokinase activity MF
GO:0006002 fructose 6-phosphate metabolic process BP
GO:0005524 ATP binding MF
GO:0006096 glycolytic process BP
GO:0005737 cytoplasm CC

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values