General information for g10749.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as ATP-dependent 6-phosphofructokinase.
Parent gene
- The parent gene g10749 is located on chr_1: 11703097..11706214 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10749 | g10749.t10 | TSS | g10749.t10 | 11697838 | 11697838 |
| chr_1 | g10749 | g10749.t10 | isoform | g10749.t10 | 11698227 | 11703471 |
| chr_1 | g10749 | g10749.t10 | exon | g10749.t10.exon1 | 11698227 | 11698376 |
| chr_1 | g10749 | g10749.t10 | exon | g10749.t10.exon2 | 11699190 | 11699686 |
| chr_1 | g10749 | g10749.t10 | exon | g10749.t10.exon3 | 11701464 | 11701572 |
| chr_1 | g10749 | g10749.t10 | exon | g10749.t10.exon4 | 11702119 | 11702265 |
| chr_1 | g10749 | g10749.t10 | exon | g10749.t10.exon5 | 11702336 | 11702380 |
| chr_1 | g10749 | g10749.t10 | exon | g10749.t10.exon6 | 11702510 | 11703471 |
| chr_1 | g10749 | g10749.t10 | cds | g10749.t10.CDS1 | 11702610 | 11703470 |
| chr_1 | g10749 | g10749.t10 | TTS | g10749.t10 | 11704336 | 11704336 |
Sequences
>g10749.t10 Gene=g10749 Length=1910
ATGTCTAATAACGATGACGTTCAAAGATTTATCGGTCGTGGAAGTCGAAAAGGACATGGA
ATTGCTGTATTCACTAGTGGAGGTGACTCTCAGGGTATGAATGCTGCTGTACGTGCTGTT
GTTCGCATGGGAATTTACTTAGGATGCAAGGTTTATTTCATCAAAGAGGGTTACCAAGGA
ATGGTTGATGGAGGTGAAAATATTGTAGAAGCAAATTGGGCATCTGTATCGAGTATCATT
CATCGTGGAGGAACTGTTATTGGTTCAGCACGTTGTAAGGATTTTCGTGAACGTCCAGGA
CGTTTGAAGGCTGCTGAGAATCTCATTAAACGTGGAATCACAAATTTGGTCGTTATTGGC
GGTGATGGTTCATTAACTGGTGCTAATTTGTTCCGCGTTGAATGGAGTAGCTTATTAGAC
GAGTTACTGTCAACTGGAAGAATTTCAACTGAAGAACGTCAAAAATATAAGAGCTTACAT
ATCGCTGGTATGGTTGGATCGATTGATAACGATTTTTGCGGTACTGACATGACAATTGGT
ACCGATTCTGCTTTACATCGTATTATCGAGGCTATTGATGCTATTGTTAGTACTGCATAT
TCGCATCAGCGTACATTTATCATGGAAGTCATGGGAAGACACTGTGGTTACTTAGCTGTA
GTCGCTGCGCTTGCTTCAGAAGCTGACTACGTATTTATACCTGAGGATCCTGTCAACGTT
CACTGGAAAGAGAATCTGTGCAAAAAATTACTTCAGGAACGTTCTGCTGGTCAGCGTTTA
AACATTATAATTGTTGCTGAAGGAGCTATTGATCGTGAAGGTAATCCTATTACAGCTGAA
ATGGTTAAGAAAGTAGTCGTTGATGAATTGAAACAAGACACAAGAATCACTGTTTTGGGT
CATAGAGGAGGAAATCCTTCAGCTTTCGATCGTGTTTTGGTAAGTTCACATGGGCGCAGA
AGCTGTTATGGCTTTGATGGAAGCAACAGATGACACTGAACCTTGTGTCGTTTCATTAGA
CGGCAATCAAGCTGTTCGTCTCCCACTTATGGAATGTGTTAATCGCACACAAGCTGTAGC
TAAAGCCATGGCTGAACGTAAATTTGAATTAGCTGTTGACCTTCGTGGACGTTCATTTGC
AAGAAATTTAGAGACATACAAAATGTTGACTCGCTTGAAGCCACCAAAAGAAGCTTTTGA
TGCTGAAGGTCGTGGAAAAGAAGGGTACACTCTTGCTGTTATGCATATCGGTGCACCAGC
TTGTGGAATGAATGCAGCAGTTCGTTCATTTGTTCGTAATTCAATTTATCGAGGTGATAC
TGTTTATGGTATTCACGACGGAATTGAAGGATTGGTTGCAGGACATTTTACAAAAATGGA
TTGGGCTGATGTCACTGGCTGGGTTGGACAAGGTGGTGCTTTTCTTGGAACAAAACGTAC
ACTTCCAGAAGGAAAGTTCAAGGAAATCGCTCAAAGATTCCGTGAATTTGGTATTCAAGG
TTTGCTTGTCGTTGGTGGTTTCGAAGGCTATCATTCATTGGGACAACTTGTCGATCAACG
TGACAATTATCCAGAATTTTGTATCCCAATGATCATTATTCCATCAACTATTTCAAATAA
TGTTCCTGGAACTGAATTTTCACTTGGTGCTGATACTGGTCTAAACGAAATCACCGAAAT
TTGTGATCGTATTCGTCAATCAGCACAAGGTACAAAACGACGTGTTTTCGTCATTGAAAC
TATGGGAGGCTATTGCGGATATTTGGCAACATTAGCTGGTCTTGCTGGTGGTGCAGATGC
TGCATACATCTATGAAGAGAAATTTTCTATTAAGGATTTGCAACAAGATGTCTATCATAT
GGCATCAAAAATGGCTGATGGCGTTCAGCGTGGTCTTATCTTGAGAAATG
>g10749.t10 Gene=g10749 Length=287
MECVNRTQAVAKAMAERKFELAVDLRGRSFARNLETYKMLTRLKPPKEAFDAEGRGKEGY
TLAVMHIGAPACGMNAAVRSFVRNSIYRGDTVYGIHDGIEGLVAGHFTKMDWADVTGWVG
QGGAFLGTKRTLPEGKFKEIAQRFREFGIQGLLVVGGFEGYHSLGQLVDQRDNYPEFCIP
MIIIPSTISNNVPGTEFSLGADTGLNEITEICDRIRQSAQGTKRRVFVIETMGGYCGYLA
TLAGLAGGADAAYIYEEKFSIKDLQQDVYHMASKMADGVQRGLILRN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g10749.t10 | Gene3D | G3DSA:3.40.50.450 | - | 52 | 265 | 7.0E-58 |
| 2 | g10749.t10 | PANTHER | PTHR13697 | PHOSPHOFRUCTOKINASE | 1 | 287 | 2.1E-132 |
| 7 | g10749.t10 | PRINTS | PR00476 | ATP-dependent phosphofructokinase family signature | 64 | 83 | 3.1E-34 |
| 4 | g10749.t10 | PRINTS | PR00476 | ATP-dependent phosphofructokinase family signature | 89 | 102 | 3.1E-34 |
| 6 | g10749.t10 | PRINTS | PR00476 | ATP-dependent phosphofructokinase family signature | 148 | 164 | 3.1E-34 |
| 9 | g10749.t10 | PRINTS | PR00476 | ATP-dependent phosphofructokinase family signature | 182 | 199 | 3.1E-34 |
| 3 | g10749.t10 | PRINTS | PR00476 | ATP-dependent phosphofructokinase family signature | 200 | 218 | 3.1E-34 |
| 8 | g10749.t10 | PRINTS | PR00476 | ATP-dependent phosphofructokinase family signature | 221 | 237 | 3.1E-34 |
| 5 | g10749.t10 | PRINTS | PR00476 | ATP-dependent phosphofructokinase family signature | 239 | 256 | 3.1E-34 |
| 1 | g10749.t10 | Pfam | PF00365 | Phosphofructokinase | 62 | 273 | 3.9E-72 |
| 11 | g10749.t10 | SUPERFAMILY | SSF53784 | Phosphofructokinase | 1 | 285 | 8.37E-81 |
| 10 | g10749.t10 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 226 | 248 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003872 | 6-phosphofructokinase activity | MF |
| GO:0006002 | fructose 6-phosphate metabolic process | BP |
| GO:0006096 | glycolytic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
