Gene loci information

Transcript annotation

  • This transcript has been annotated as ATP-dependent 6-phosphofructokinase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10749 g10749.t11 isoform g10749.t11 11699218 11704623
chr_1 g10749 g10749.t11 exon g10749.t11.exon1 11699218 11699598
chr_1 g10749 g10749.t11 exon g10749.t11.exon2 11699649 11699686
chr_1 g10749 g10749.t11 exon g10749.t11.exon3 11701464 11701572
chr_1 g10749 g10749.t11 exon g10749.t11.exon4 11702119 11702271
chr_1 g10749 g10749.t11 cds g10749.t11.CDS1 11702264 11702271
chr_1 g10749 g10749.t11 exon g10749.t11.exon5 11702336 11702371
chr_1 g10749 g10749.t11 cds g10749.t11.CDS2 11702336 11702371
chr_1 g10749 g10749.t11 exon g10749.t11.exon6 11702510 11703784
chr_1 g10749 g10749.t11 cds g10749.t11.CDS3 11702510 11703784
chr_1 g10749 g10749.t11 exon g10749.t11.exon7 11703841 11703919
chr_1 g10749 g10749.t11 cds g10749.t11.CDS4 11703841 11703919
chr_1 g10749 g10749.t11 exon g10749.t11.exon8 11704033 11704623
chr_1 g10749 g10749.t11 cds g10749.t11.CDS5 11704033 11704086
chr_1 g10749 g10749.t11 TTS g10749.t11 11705572 11705572
chr_1 g10749 g10749.t11 TSS g10749.t11 NA NA

Sequences

>g10749.t11 Gene=g10749 Length=2662
GAATGGTTGATGGAGGTGAAAATATTGTAGAAGCAAATTGGGCATCTGTATCGAGTATCA
TTCATCGTGGAGGAACTGTTATTGGTTCAGCACGTTGTAAGGATTTTCGTGAACGTCCAG
GACGTTTGAAGGCTGCTGAGAATCTCATTAAACGTGGAATCACAAATTTGGTCGTTATTG
GCGGTGATGGTTCATTAACTGGTGCTAATTTGTTCCGCGTTGAATGGAGTAGCTTATTAG
ACGAGTTACTGTCAACTGGAAGAATTTCAACTGAAGAACGTCAAAAATATAAGAGCTTAC
ATATCGCTGGTATGGTTGGATCGATTGATAACGATTTTTGCGGTACTGACATGACAATTG
GTACCGATTCTGCTTTACATCCGTACATTTATCATGGAAGTCATGGGAAGACACTGTGGT
TACTTAGCTGTAGTCGCTGCGCTTGCTTCAGAAGCTGACTACGTATTTATACCTGAGGAT
CCTGTCAACGTTCACTGGAAAGAGAATCTGTGCAAAAAATTACTTCAGGAACGTTCTGCT
GGTCAGCGTTTAAACATTATAATTGTTGCTGAAGGAGCTATTGATCGTGAAGGTAATCCT
ATTACAGCTGAAATGGTTAAGAAAGTAGTCGTTGATGAATTGAAACAAGACACAAGAATC
ACTGTTTTGGGTCATGTACAGAGAGGAGGAAATCCTTCAGCTTTCGATCGTGTTTTGCAT
GGGCGCAGAAGCTGTTATGGCTTTGATGGAAGCAACAGATGACACTGAACCTTGTGTCGT
TTCATTAGACGGCAATCAAGCTGTTCGTCTCCCACTTATGGAATGTGTTAATCGCACACA
AGCTGTAGCTAAAGCCATGGCTGAACGTAAATTTGAATTAGCTGTTGACCTTCGTGGACG
TTCATTTGCAAGAAATTTAGAGACATACAAAATGTTGACTCGCTTGAAGCCACCAAAAGA
AGCTTTTGATGCTGAAGGTCGTGGAAAAGAAGGGTACACTCTTGCTGTTATGCATATCGG
TGCACCAGCTTGTGGAATGAATGCAGCAGTTCGTTCATTTGTTCGTAATTCAATTTATCG
AGGTGATACTGTTTATGGTATTCACGACGGAATTGAAGGATTGGTTGCAGGACATTTTAC
AAAAATGGATTGGGCTGATGTCACTGGCTGGGTTGGACAAGGTGGTGCTTTTCTTGGAAC
AAAACGTACACTTCCAGAAGGAAAGTTCAAGGAAATCGCTCAAAGATTCCGTGAATTTGG
TATTCAAGGTTTGCTTGTCGTTGGTGGTTTCGAAGGCTATCATTCATTGGGACAACTTGT
CGATCAACGTGACAATTATCCAGAATTTTGTATCCCAATGATCATTATTCCATCAACTAT
TTCAAATAATGTTCCTGGAACTGAATTTTCACTTGGTGCTGATACTGGTCTAAACGAAAT
CACCGAAATTTGTGATCGTATTCGTCAATCAGCACAAGGTACAAAACGACGTGTTTTCGT
CATTGAAACTATGGGAGGCTATTGCGGATATTTGGCAACATTAGCTGGTCTTGCTGGTGG
TGCAGATGCTGCATACATCTATGAAGAGAAATTTTCTATTAAGGATTTGCAACAAGATGT
CTATCATATGGCATCAAAAATGGCTGATGGCGTTCAGCGTGGTCTTATCTTGAGAAATGA
AAAGGCAAATGACAACTACAACACTGATTTCATTCATCGTCTTTATTCAGAGGAAGGCAA
AGGACTTTTCTCCTGTCGTTCAAATATTCTTGGCCATATGCAACAAGGTGGTTCACCAAC
ACCTTTCGATCGTAATATGGGTACAAAAATGGCAGCAAAAGCTGTAGAGTGGCTTGCAAC
ACAAATCAAAGAAAATACGAAAGATGGAAAACTTTATGCATCAGCACCAGATACCGCATG
TTTGTTGGGTCTCGTTAGACGTCAATATAAATTCTCACCATTGAAAGAGCTTATTGCTGA
CACTAATTTTGAACAACGTATTCCTAAAACTCAATGGTGGCTCAAACTTAGACCTTTGTT
GCGTATTCTCGCTAAGCATGATTCTACTTATGAGGAAGAAGGTTTGTATATAACAGTAGA
TGAAGAATGTAACCACGATATGTAAGAATAATGCGCAAGGCTTTAAAGCTATTAAAAAAT
AAGCGTTAAAAATAAAGTCCAAGACATAAAATTACAATTCTCAACAATTTTCTAGATTAT
GAGAAAGTCATTTTTGTCTTGAAGCACAAAATTATTAATCTATATTTAGAGATAATTTAC
ACAATTTGAAATTGCTGTACTATGTACCATGACATCAATTATAATTTTTCATGCTTTATA
AAAATTATTATTATCATTATCTCATTCGAATTTGTAAAAGAGAAAAAGAATGTTTGAAAT
TTATTTATTTTATAATTACTGCTACTGCTACTACTTATTTAAAATTTATTATTTGAAGAA
CAAACAAATTTTATTTTTTTATGAGTGATTATTATAAATGATCATGTATCACTTTGTAGG
AGTTAAGATATTCAAAAAATTTTCCTTGATTTTATTTGGCTGTTTATCGAATTTATTTAT
AATTAAGACCTTTTACCCTTCTCTTACCATAAACAAGTACAATAATAAAACGCATTAAGG
ACAAAGAATTTTGACACACACA

>g10749.t11 Gene=g10749 Length=483
MYREEEILQLSIVFCMGAEAVMALMEATDDTEPCVVSLDGNQAVRLPLMECVNRTQAVAK
AMAERKFELAVDLRGRSFARNLETYKMLTRLKPPKEAFDAEGRGKEGYTLAVMHIGAPAC
GMNAAVRSFVRNSIYRGDTVYGIHDGIEGLVAGHFTKMDWADVTGWVGQGGAFLGTKRTL
PEGKFKEIAQRFREFGIQGLLVVGGFEGYHSLGQLVDQRDNYPEFCIPMIIIPSTISNNV
PGTEFSLGADTGLNEITEICDRIRQSAQGTKRRVFVIETMGGYCGYLATLAGLAGGADAA
YIYEEKFSIKDLQQDVYHMASKMADGVQRGLILRNEKANDNYNTDFIHRLYSEEGKGLFS
CRSNILGHMQQGGSPTPFDRNMGTKMAAKAVEWLATQIKENTKDGKLYASAPDTACLLGL
VRRQYKFSPLKELIADTNFEQRIPKTQWWLKLRPLLRILAKHDSTYEEEGLYITVDEECN
HDM

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g10749.t11 Gene3D G3DSA:3.40.50.450 - 7 61 5.2E-14
15 g10749.t11 Gene3D G3DSA:3.40.50.450 - 110 439 8.1E-163
13 g10749.t11 Gene3D G3DSA:3.40.50.460 - 251 456 8.1E-163
2 g10749.t11 PANTHER PTHR13697 PHOSPHOFRUCTOKINASE 15 465 6.7E-208
9 g10749.t11 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 112 131 7.1E-43
10 g10749.t11 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 137 150 7.1E-43
6 g10749.t11 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 196 212 7.1E-43
7 g10749.t11 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 230 247 7.1E-43
3 g10749.t11 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 248 266 7.1E-43
4 g10749.t11 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 269 285 7.1E-43
5 g10749.t11 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 287 304 7.1E-43
8 g10749.t11 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 358 380 7.1E-43
1 g10749.t11 Pfam PF00365 Phosphofructokinase 110 394 1.2E-90
16 g10749.t11 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 6 -
18 g10749.t11 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 7 25 -
17 g10749.t11 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 26 483 -
12 g10749.t11 ProSitePatterns PS00433 Phosphofructokinase signature. 362 380 -
11 g10749.t11 SUPERFAMILY SSF53784 Phosphofructokinase 39 475 5.34E-109

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003872 6-phosphofructokinase activity MF
GO:0006002 fructose 6-phosphate metabolic process BP
GO:0006096 glycolytic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values