General information for g10749.t15
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as ATP-dependent 6-phosphofructokinase.
Parent gene
- The parent gene g10749 is located on chr_1: 11703097..11706214 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10749 | g10749.t15 | isoform | g10749.t15 | 11703097 | 11706214 |
| chr_1 | g10749 | g10749.t15 | exon | g10749.t15.exon1 | 11703097 | 11703784 |
| chr_1 | g10749 | g10749.t15 | cds | g10749.t15.CDS1 | 11703150 | 11703784 |
| chr_1 | g10749 | g10749.t15 | exon | g10749.t15.exon2 | 11703841 | 11703919 |
| chr_1 | g10749 | g10749.t15 | cds | g10749.t15.CDS2 | 11703841 | 11703919 |
| chr_1 | g10749 | g10749.t15 | exon | g10749.t15.exon3 | 11704977 | 11706214 |
| chr_1 | g10749 | g10749.t15 | cds | g10749.t15.CDS3 | 11704977 | 11705003 |
| chr_1 | g10749 | g10749.t15 | TTS | g10749.t15 | 11706200 | 11706200 |
| chr_1 | g10749 | g10749.t15 | TSS | g10749.t15 | NA | NA |
Sequences
>g10749.t15 Gene=g10749 Length=2005
CATTGGGACAACTTGTCGATCAACGTGACAATTATCCAGAATTTTGTATCCCAATGATCA
TTATTCCATCAACTATTTCAAATAATGTTCCTGGAACTGAATTTTCACTTGGTGCTGATA
CTGGTCTAAACGAAATCACCGAAATTTGTGATCGTATTCGTCAATCAGCACAAGGTACAA
AACGACGTGTTTTCGTCATTGAAACTATGGGAGGCTATTGCGGATATTTGGCAACATTAG
CTGGTCTTGCTGGTGGTGCAGATGCTGCATACATCTATGAAGAGAAATTTTCTATTAAGG
ATTTGCAACAAGATGTCTATCATATGGCATCAAAAATGGCTGATGGCGTTCAGCGTGGTC
TTATCTTGAGAAATGAAAAGGCAAATGACAACTACAACACTGATTTCATTCATCGTCTTT
ATTCAGAGGAAGGCAAAGGACTTTTCTCCTGTCGTTCAAATATTCTTGGCCATATGCAAC
AAGGTGGTTCACCAACACCTTTCGATCGTAATATGGGTACAAAAATGGCAGCAAAAGCTG
TAGAGTGGCTTGCAACACAAATCAAAGAAAATACGAAAGATGGAAAACTTTATGCATCAG
CACCAGATACCGCATGTTTGTTGGGTCTCGTTAGACGTCAATATAAATTCTCACCATTGA
AAGAGCTTATTGCTGACACTAATTTTGAACAACGTATTCCTAAAACTCAATGGTGGCTCA
AACTTAGACCTTTGTTGCGTATTCTCGCTAAGCATGATTCTACTTATATTTCGTCGCTAA
TATGGCCGCAATAAAGAGTCTTTAAAAGGTGTGTGTTTAAAAATTTAAAAGAAATGTTAA
TTGATTGGTGAATAACTGCCTGCACACAATGGATAAAAAAATCTTGGACATCAATTGGCG
TATATCTGTATTTGTAATCAATTTTTTTCTTTCATCTTTTCCTTAATGTTTCCTTATGCA
ACTTGTTTTTCCTTGATGTTTCACCTTGATTTTATTTTTCTATTTTGTATTAATCTTGCT
TAATTGTGATTGATTTTAGTTCTTGTAATTTTCTATTTACTTATATTTATCTATTCGATT
GGCTTTAACATTGATGCTGGCGCTGAATAATAATATCGCTTTCAGAATGCTGCAGCAGTT
AATAATTTCTTTTTTCAAGACAATAAAATTTATTGCTGTTAACTTCTATGTAATTTCTTA
TAATGATTGAATGTTAAGAAATTACCTAAAATCTATCGCGCAACCTACTTTGAATAATCC
TTAACACCAATAGTCAGACACATACCTCAAAAACTGAGTGTCTTATTATTGGATAGATGC
AGTGATACATGAAAACTACTAATTTATAGATAGAAATGAATCCAAAAGCAGGAAAAAAAT
TATCATTTACAAAACTAAAAGCAAGAAAAGATATCAAAACAATCTTTATAAGATAAAAAT
ATTCACTCTCTATCTGTTTGTTTGTTACATAAATTATTGCCATTCTTTGTGGTATACATT
TTACTATTATTCTAGTATTACGTGTATGTTTTTAAAAAAAACCTTATACTTTTTTGGCAC
AAGCTGTCTTCTCTATTACCCTAAATCTTTCGATTAACTTTCTTTCTTTATAAGAGATCA
AAGAGTTTTTTTTTTAAATTTCTGTTATGATTTTTGTTAATGTTGAATGCAGTGCACCAT
TAAAAAATATCTATTTAAATTCTTTTTTCATTACCATAAGCATCACTATTACTTTACCTT
GATCACCCAAAATTTTATTTTTCTTGTATCTATACCACCCCCCAAACATCTTTAAACCCT
TTTAATTGTATCAAAATTTATCAACACACACTCTAGTATAGAATTATTTAAATTTTATGA
TTTTATTACAAAATTTATGAAAACTTTACTTACTTATATTATGAACAACTTTTAACAGAA
TTCAAAGAAATGTTTGAAATAAATTCAGATTACAAATAAAAAATGAATAAAAAGAGTTCG
ATGTTGTTACCGAAAGAAAAAAAAT
>g10749.t15 Gene=g10749 Length=246
MIIIPSTISNNVPGTEFSLGADTGLNEITEICDRIRQSAQGTKRRVFVIETMGGYCGYLA
TLAGLAGGADAAYIYEEKFSIKDLQQDVYHMASKMADGVQRGLILRNEKANDNYNTDFIH
RLYSEEGKGLFSCRSNILGHMQQGGSPTPFDRNMGTKMAAKAVEWLATQIKENTKDGKLY
ASAPDTACLLGLVRRQYKFSPLKELIADTNFEQRIPKTQWWLKLRPLLRILAKHDSTYIS
SLIWPQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g10749.t15 | Gene3D | G3DSA:3.40.50.460 | - | 23 | 173 | 9.1E-52 |
| 11 | g10749.t15 | Gene3D | G3DSA:3.40.50.460 | - | 194 | 241 | 4.5E-6 |
| 2 | g10749.t15 | PANTHER | PTHR13697:SF13 | ATP-DEPENDENT 6-PHOSPHOFRUCTOKINASE, MUSCLE TYPE | 1 | 235 | 1.9E-118 |
| 3 | g10749.t15 | PANTHER | PTHR13697 | PHOSPHOFRUCTOKINASE | 1 | 235 | 1.9E-118 |
| 8 | g10749.t15 | PRINTS | PR00476 | ATP-dependent phosphofructokinase family signature | 2 | 19 | 6.0E-28 |
| 4 | g10749.t15 | PRINTS | PR00476 | ATP-dependent phosphofructokinase family signature | 20 | 38 | 6.0E-28 |
| 5 | g10749.t15 | PRINTS | PR00476 | ATP-dependent phosphofructokinase family signature | 41 | 57 | 6.0E-28 |
| 7 | g10749.t15 | PRINTS | PR00476 | ATP-dependent phosphofructokinase family signature | 59 | 76 | 6.0E-28 |
| 6 | g10749.t15 | PRINTS | PR00476 | ATP-dependent phosphofructokinase family signature | 130 | 152 | 6.0E-28 |
| 1 | g10749.t15 | Pfam | PF00365 | Phosphofructokinase | 1 | 166 | 3.8E-54 |
| 10 | g10749.t15 | ProSitePatterns | PS00433 | Phosphofructokinase signature. | 134 | 152 | - |
| 9 | g10749.t15 | SUPERFAMILY | SSF53784 | Phosphofructokinase | 1 | 232 | 1.83E-61 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003872 | 6-phosphofructokinase activity | MF |
| GO:0006002 | fructose 6-phosphate metabolic process | BP |
| GO:0006096 | glycolytic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
