Gene loci information

Transcript annotation

  • This transcript has been annotated as ATP-dependent 6-phosphofructokinase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10749 g10749.t4 TSS g10749.t4 11697838 11697838
chr_1 g10749 g10749.t4 isoform g10749.t4 11697983 11699684
chr_1 g10749 g10749.t4 exon g10749.t4.exon1 11697983 11698095
chr_1 g10749 g10749.t4 exon g10749.t4.exon2 11698221 11698376
chr_1 g10749 g10749.t4 cds g10749.t4.CDS1 11698227 11698376
chr_1 g10749 g10749.t4 exon g10749.t4.exon3 11699190 11699684
chr_1 g10749 g10749.t4 cds g10749.t4.CDS2 11699190 11699684
chr_1 g10749 g10749.t4 TTS g10749.t4 NA NA

Sequences

>g10749.t4 Gene=g10749 Length=764
TTGCTTTTTTTCTAGTTCAGGAAGAAAATAGAAAAAAAAGTTTAGGTCAACAAAAATTAA
ATTGTGCAAGAATATTTTTGATTGTCAAGTTCTATCTATCTAACATTGAATAAAGAAAAA
TGTCTAATAACGATGACGTTCAAAGATTTATCGGTCGTGGAAGTCGAAAAGGACATGGAA
TTGCTGTATTCACTAGTGGAGGTGACTCTCAGGGTATGAATGCTGCTGTACGTGCTGTTG
TTCGCATGGGAATTTACTTAGGATGCAAGGTTTATTTCATCAAAGAGGGTTACCAAGGAA
TGGTTGATGGAGGTGAAAATATTGTAGAAGCAAATTGGGCATCTGTATCGAGTATCATTC
ATCGTGGAGGAACTGTTATTGGTTCAGCACGTTGTAAGGATTTTCGTGAACGTCCAGGAC
GTTTGAAGGCTGCTGAGAATCTCATTAAACGTGGAATCACAAATTTGGTCGTTATTGGCG
GTGATGGTTCATTAACTGGTGCTAATTTGTTCCGCGTTGAATGGAGTAGCTTATTAGACG
AGTTACTGTCAACTGGAAGAATTTCAACTGAAGAACGTCAAAAATATAAGAGCTTACATA
TCGCTGGTATGGTTGGATCGATTGATAACGATTTTTGCGGTACTGACATGACAATTGGTA
CCGATTCTGCTTTACATCGTATTATCGAGGCTATTGATGCTATTGTTAGTACTGCATATT
CGCATCAGCGTACATTTATCATGGAAGTCATGGGAAGACACTGT

>g10749.t4 Gene=g10749 Length=215
MSNNDDVQRFIGRGSRKGHGIAVFTSGGDSQGMNAAVRAVVRMGIYLGCKVYFIKEGYQG
MVDGGENIVEANWASVSSIIHRGGTVIGSARCKDFRERPGRLKAAENLIKRGITNLVVIG
GDGSLTGANLFRVEWSSLLDELLSTGRISTEERQKYKSLHIAGMVGSIDNDFCGTDMTIG
TDSALHRIIEAIDAIVSTAYSHQRTFIMEVMGRHC

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g10749.t4 Gene3D G3DSA:3.40.50.450 - 20 215 0
2 g10749.t4 PANTHER PTHR13697:SF53 ATP-DEPENDENT 6-PHOSPHOFRUCTOKINASE 5 215 0
3 g10749.t4 PANTHER PTHR13697 PHOSPHOFRUCTOKINASE 5 215 0
4 g10749.t4 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 23 42 0
9 g10749.t4 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 48 61 0
6 g10749.t4 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 112 128 0
7 g10749.t4 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 162 179 0
5 g10749.t4 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 180 198 0
8 g10749.t4 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 200 215 0
1 g10749.t4 Pfam PF00365 Phosphofructokinase 21 215 0
10 g10749.t4 SUPERFAMILY SSF53784 Phosphofructokinase 18 215 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003872 6-phosphofructokinase activity MF
GO:0006002 fructose 6-phosphate metabolic process BP
GO:0006096 glycolytic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values