Gene loci information

Transcript annotation

  • This transcript has been annotated as ATP-dependent 6-phosphofructokinase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10749 g10749.t7 TSS g10749.t7 11697838 11697838
chr_1 g10749 g10749.t7 isoform g10749.t7 11697983 11703097
chr_1 g10749 g10749.t7 exon g10749.t7.exon1 11697983 11698095
chr_1 g10749 g10749.t7 exon g10749.t7.exon2 11698221 11698376
chr_1 g10749 g10749.t7 cds g10749.t7.CDS1 11698227 11698376
chr_1 g10749 g10749.t7 exon g10749.t7.exon3 11699190 11699686
chr_1 g10749 g10749.t7 cds g10749.t7.CDS2 11699190 11699686
chr_1 g10749 g10749.t7 exon g10749.t7.exon4 11700606 11700738
chr_1 g10749 g10749.t7 cds g10749.t7.CDS3 11700606 11700738
chr_1 g10749 g10749.t7 exon g10749.t7.exon5 11702137 11702271
chr_1 g10749 g10749.t7 cds g10749.t7.CDS4 11702137 11702271
chr_1 g10749 g10749.t7 exon g10749.t7.exon6 11702336 11702371
chr_1 g10749 g10749.t7 cds g10749.t7.CDS5 11702336 11702371
chr_1 g10749 g10749.t7 exon g10749.t7.exon7 11702510 11703097
chr_1 g10749 g10749.t7 cds g10749.t7.CDS6 11702510 11702554
chr_1 g10749 g10749.t7 TTS g10749.t7 NA NA

Sequences

>g10749.t7 Gene=g10749 Length=1658
TTGCTTTTTTTCTAGTTCAGGAAGAAAATAGAAAAAAAAGTTTAGGTCAACAAAAATTAA
ATTGTGCAAGAATATTTTTGATTGTCAAGTTCTATCTATCTAACATTGAATAAAGAAAAA
TGTCTAATAACGATGACGTTCAAAGATTTATCGGTCGTGGAAGTCGAAAAGGACATGGAA
TTGCTGTATTCACTAGTGGAGGTGACTCTCAGGGTATGAATGCTGCTGTACGTGCTGTTG
TTCGCATGGGAATTTACTTAGGATGCAAGGTTTATTTCATCAAAGAGGGTTACCAAGGAA
TGGTTGATGGAGGTGAAAATATTGTAGAAGCAAATTGGGCATCTGTATCGAGTATCATTC
ATCGTGGAGGAACTGTTATTGGTTCAGCACGTTGTAAGGATTTTCGTGAACGTCCAGGAC
GTTTGAAGGCTGCTGAGAATCTCATTAAACGTGGAATCACAAATTTGGTCGTTATTGGCG
GTGATGGTTCATTAACTGGTGCTAATTTGTTCCGCGTTGAATGGAGTAGCTTATTAGACG
AGTTACTGTCAACTGGAAGAATTTCAACTGAAGAACGTCAAAAATATAAGAGCTTACATA
TCGCTGGTATGGTTGGATCGATTGATAACGATTTTTGCGGTACTGACATGACAATTGGTA
CCGATTCTGCTTTACATCGTATTATCGAGGCTATTGATGCTATTGTTAGTACTGCATATT
CGCATCAGCGTACATTTATCATGGAAGTCATGGGAAGACACTGTGGTTATTTAGCTGTTG
TGGCTGGATTATGCACGGAAGCCGACTATATCTTCATTCCAGAAAGCCCAGCAAAGGCAA
GACACATATCCACAAAATTTATTGATAGAAGCAATTTAAGCACAGATAATAATGTGTTGC
GTTTAAACATTATAATTGTTGCTGAAGGAGCTATTGATCGTGAAGGTAATCCTATTACAG
CTGAAATGGTTAAGAAAGTAGTCGTTGATGAATTGAAACAAGACACAAGAATCACTGTTT
TGGGTCATGTACAGAGAGGAGGAAATCCTTCAGCTTTCGATCGTGTTTTGCATGGGCGCA
GAAGCTGTTATGGCTTTGATGGAAGCAACAGATGACACTGAACCTTGTGTCGTTTCATTA
GACGGCAATCAAGCTGTTCGTCTCCCACTTATGGAATGTGTTAATCGCACACAAGCTGTA
GCTAAAGCCATGGCTGAACGTAAATTTGAATTAGCTGTTGACCTTCGTGGACGTTCATTT
GCAAGAAATTTAGAGACATACAAAATGTTGACTCGCTTGAAGCCACCAAAAGAAGCTTTT
GATGCTGAAGGTCGTGGAAAAGAAGGGTACACTCTTGCTGTTATGCATATCGGTGCACCA
GCTTGTGGAATGAATGCAGCAGTTCGTTCATTTGTTCGTAATTCAATTTATCGAGGTGAT
ACTGTTTATGGTATTCACGACGGAATTGAAGGATTGGTTGCAGGACATTTTACAAAAATG
GATTGGGCTGATGTCACTGGCTGGGTTGGACAAGGTGGTGCTTTTCTTGGAACAAAACGT
ACACTTCCAGAAGGAAAGTTCAAGGAAATCGCTCAAAGATTCCGTGAATTTGGTATTCAA
GGTTTGCTTGTCGTTGGTGGTTTCGAAGGCTATCATTC

>g10749.t7 Gene=g10749 Length=331
MSNNDDVQRFIGRGSRKGHGIAVFTSGGDSQGMNAAVRAVVRMGIYLGCKVYFIKEGYQG
MVDGGENIVEANWASVSSIIHRGGTVIGSARCKDFRERPGRLKAAENLIKRGITNLVVIG
GDGSLTGANLFRVEWSSLLDELLSTGRISTEERQKYKSLHIAGMVGSIDNDFCGTDMTIG
TDSALHRIIEAIDAIVSTAYSHQRTFIMEVMGRHCGYLAVVAGLCTEADYIFIPESPAKA
RHISTKFIDRSNLSTDNNVLRLNIIIVAEGAIDREGNPITAEMVKKVVVDELKQDTRITV
LGHVQRGGNPSAFDRVLHGRRSCYGFDGSNR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
16 g10749.t7 Gene3D G3DSA:3.40.50.450 - 21 320 2.9E-150
15 g10749.t7 Gene3D G3DSA:3.40.50.460 - 184 308 2.9E-150
2 g10749.t7 PANTHER PTHR13697 PHOSPHOFRUCTOKINASE 18 320 5.1E-148
3 g10749.t7 PANTHER PTHR13697:SF4 ATP-DEPENDENT 6-PHOSPHOFRUCTOKINASE 18 320 5.1E-148
18 g10749.t7 PIRSF PIRSF000532 ATP_PFK_prok 17 137 5.2E-35
17 g10749.t7 PIRSF PIRSF000532 ATP_PFK_prok 146 327 1.2E-46
4 g10749.t7 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 23 42 4.2E-90
8 g10749.t7 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 48 61 4.2E-90
10 g10749.t7 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 112 128 4.2E-90
11 g10749.t7 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 162 179 4.2E-90
5 g10749.t7 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 180 198 4.2E-90
7 g10749.t7 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 200 216 4.2E-90
12 g10749.t7 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 218 235 4.2E-90
6 g10749.t7 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 259 271 4.2E-90
9 g10749.t7 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 293 315 4.2E-90
1 g10749.t7 Pfam PF00365 Phosphofructokinase 21 319 5.7E-102
14 g10749.t7 ProSitePatterns PS00433 Phosphofructokinase signature. 297 315 -
13 g10749.t7 SUPERFAMILY SSF53784 Phosphofructokinase 18 317 2.09E-92

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008443 phosphofructokinase activity MF
GO:0003872 6-phosphofructokinase activity MF
GO:0006002 fructose 6-phosphate metabolic process BP
GO:0005524 ATP binding MF
GO:0006096 glycolytic process BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values