Gene loci information

Transcript annotation

  • This transcript has been annotated as ATP-dependent 6-phosphofructokinase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10749 g10749.t8 TSS g10749.t8 11697838 11697838
chr_1 g10749 g10749.t8 isoform g10749.t8 11697983 11703471
chr_1 g10749 g10749.t8 exon g10749.t8.exon1 11697983 11698095
chr_1 g10749 g10749.t8 exon g10749.t8.exon2 11698221 11698376
chr_1 g10749 g10749.t8 exon g10749.t8.exon3 11699190 11699686
chr_1 g10749 g10749.t8 exon g10749.t8.exon4 11701464 11701572
chr_1 g10749 g10749.t8 exon g10749.t8.exon5 11702119 11702271
chr_1 g10749 g10749.t8 exon g10749.t8.exon6 11702336 11702371
chr_1 g10749 g10749.t8 exon g10749.t8.exon7 11702510 11703471
chr_1 g10749 g10749.t8 cds g10749.t8.CDS1 11702610 11703470
chr_1 g10749 g10749.t8 TTS g10749.t8 11704336 11704336

Sequences

>g10749.t8 Gene=g10749 Length=2026
TTGCTTTTTTTCTAGTTCAGGAAGAAAATAGAAAAAAAAGTTTAGGTCAACAAAAATTAA
ATTGTGCAAGAATATTTTTGATTGTCAAGTTCTATCTATCTAACATTGAATAAAGAAAAA
TGTCTAATAACGATGACGTTCAAAGATTTATCGGTCGTGGAAGTCGAAAAGGACATGGAA
TTGCTGTATTCACTAGTGGAGGTGACTCTCAGGGTATGAATGCTGCTGTACGTGCTGTTG
TTCGCATGGGAATTTACTTAGGATGCAAGGTTTATTTCATCAAAGAGGGTTACCAAGGAA
TGGTTGATGGAGGTGAAAATATTGTAGAAGCAAATTGGGCATCTGTATCGAGTATCATTC
ATCGTGGAGGAACTGTTATTGGTTCAGCACGTTGTAAGGATTTTCGTGAACGTCCAGGAC
GTTTGAAGGCTGCTGAGAATCTCATTAAACGTGGAATCACAAATTTGGTCGTTATTGGCG
GTGATGGTTCATTAACTGGTGCTAATTTGTTCCGCGTTGAATGGAGTAGCTTATTAGACG
AGTTACTGTCAACTGGAAGAATTTCAACTGAAGAACGTCAAAAATATAAGAGCTTACATA
TCGCTGGTATGGTTGGATCGATTGATAACGATTTTTGCGGTACTGACATGACAATTGGTA
CCGATTCTGCTTTACATCGTATTATCGAGGCTATTGATGCTATTGTTAGTACTGCATATT
CGCATCAGCGTACATTTATCATGGAAGTCATGGGAAGACACTGTGGTTACTTAGCTGTAG
TCGCTGCGCTTGCTTCAGAAGCTGACTACGTATTTATACCTGAGGATCCTGTCAACGTTC
ACTGGAAAGAGAATCTGTGCAAAAAATTACTTCAGGAACGTTCTGCTGGTCAGCGTTTAA
ACATTATAATTGTTGCTGAAGGAGCTATTGATCGTGAAGGTAATCCTATTACAGCTGAAA
TGGTTAAGAAAGTAGTCGTTGATGAATTGAAACAAGACACAAGAATCACTGTTTTGGGTC
ATGTACAGAGAGGAGGAAATCCTTCAGCTTTCGATCGTGTTTTGCATGGGCGCAGAAGCT
GTTATGGCTTTGATGGAAGCAACAGATGACACTGAACCTTGTGTCGTTTCATTAGACGGC
AATCAAGCTGTTCGTCTCCCACTTATGGAATGTGTTAATCGCACACAAGCTGTAGCTAAA
GCCATGGCTGAACGTAAATTTGAATTAGCTGTTGACCTTCGTGGACGTTCATTTGCAAGA
AATTTAGAGACATACAAAATGTTGACTCGCTTGAAGCCACCAAAAGAAGCTTTTGATGCT
GAAGGTCGTGGAAAAGAAGGGTACACTCTTGCTGTTATGCATATCGGTGCACCAGCTTGT
GGAATGAATGCAGCAGTTCGTTCATTTGTTCGTAATTCAATTTATCGAGGTGATACTGTT
TATGGTATTCACGACGGAATTGAAGGATTGGTTGCAGGACATTTTACAAAAATGGATTGG
GCTGATGTCACTGGCTGGGTTGGACAAGGTGGTGCTTTTCTTGGAACAAAACGTACACTT
CCAGAAGGAAAGTTCAAGGAAATCGCTCAAAGATTCCGTGAATTTGGTATTCAAGGTTTG
CTTGTCGTTGGTGGTTTCGAAGGCTATCATTCATTGGGACAACTTGTCGATCAACGTGAC
AATTATCCAGAATTTTGTATCCCAATGATCATTATTCCATCAACTATTTCAAATAATGTT
CCTGGAACTGAATTTTCACTTGGTGCTGATACTGGTCTAAACGAAATCACCGAAATTTGT
GATCGTATTCGTCAATCAGCACAAGGTACAAAACGACGTGTTTTCGTCATTGAAACTATG
GGAGGCTATTGCGGATATTTGGCAACATTAGCTGGTCTTGCTGGTGGTGCAGATGCTGCA
TACATCTATGAAGAGAAATTTTCTATTAAGGATTTGCAACAAGATGTCTATCATATGGCA
TCAAAAATGGCTGATGGCGTTCAGCGTGGTCTTATCTTGAGAAATG

>g10749.t8 Gene=g10749 Length=287
MECVNRTQAVAKAMAERKFELAVDLRGRSFARNLETYKMLTRLKPPKEAFDAEGRGKEGY
TLAVMHIGAPACGMNAAVRSFVRNSIYRGDTVYGIHDGIEGLVAGHFTKMDWADVTGWVG
QGGAFLGTKRTLPEGKFKEIAQRFREFGIQGLLVVGGFEGYHSLGQLVDQRDNYPEFCIP
MIIIPSTISNNVPGTEFSLGADTGLNEITEICDRIRQSAQGTKRRVFVIETMGGYCGYLA
TLAGLAGGADAAYIYEEKFSIKDLQQDVYHMASKMADGVQRGLILRN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g10749.t8 Gene3D G3DSA:3.40.50.450 - 1 13 6.0E-6
13 g10749.t8 Gene3D G3DSA:3.40.50.460 - 14 38 6.0E-6
15 g10749.t8 Gene3D G3DSA:3.40.50.450 - 62 202 1.5E-101
12 g10749.t8 Gene3D G3DSA:3.40.50.460 - 203 287 1.5E-101
2 g10749.t8 PANTHER PTHR13697 PHOSPHOFRUCTOKINASE 1 287 2.1E-132
7 g10749.t8 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 64 83 3.1E-34
4 g10749.t8 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 89 102 3.1E-34
6 g10749.t8 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 148 164 3.1E-34
9 g10749.t8 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 182 199 3.1E-34
3 g10749.t8 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 200 218 3.1E-34
8 g10749.t8 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 221 237 3.1E-34
5 g10749.t8 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 239 256 3.1E-34
1 g10749.t8 Pfam PF00365 Phosphofructokinase 62 273 3.9E-72
11 g10749.t8 SUPERFAMILY SSF53784 Phosphofructokinase 1 285 8.37E-81
10 g10749.t8 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 226 248 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003872 6-phosphofructokinase activity MF
GO:0006002 fructose 6-phosphate metabolic process BP
GO:0006096 glycolytic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values