General information for g10751.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein peste.
Parent gene
- The parent gene g10751 is located on chr_1: 11716765..11718588 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10751 | g10751.t2 | isoform | g10751.t2 | 11715383 | 11717478 |
| chr_1 | g10751 | g10751.t2 | exon | g10751.t2.exon1 | 11715383 | 11715714 |
| chr_1 | g10751 | g10751.t2 | exon | g10751.t2.exon2 | 11716687 | 11716884 |
| chr_1 | g10751 | g10751.t2 | cds | g10751.t2.CDS1 | 11716765 | 11716884 |
| chr_1 | g10751 | g10751.t2 | exon | g10751.t2.exon3 | 11716954 | 11717478 |
| chr_1 | g10751 | g10751.t2 | cds | g10751.t2.CDS2 | 11716954 | 11717478 |
| chr_1 | g10751 | g10751.t2 | TSS | g10751.t2 | NA | NA |
| chr_1 | g10751 | g10751.t2 | TTS | g10751.t2 | NA | NA |
Sequences
>g10751.t2 Gene=g10751 Length=1055
AGTAGTTTGAAATTGTCACAGCAACAAAGACTTGTCTACAGAAAAATTGTTTTTTTAAGT
TTGAAATTTCATCCATATTTATGTTGATAGTTAGTTGCATGAATCATCGTCATATGAATA
AACTTCAGAAAAGATTTTCAAGTGAAGTCTAAACAAACCTTCATATACAGTAACAGTAAT
CATAAATCGATCAATTAGTTGAAATCACTGAAGGCAGTTCATAAGATTTAACTTCTATTG
TCAGAAGGGCATTGATGCCCAGTTGTTGCTCATACTTCATACAAAATCTTCTTAATTGAA
AATGAAAAAAGTAATTTACAACTTTACACACGATTTCTTCACTTTATATGCATCTCATCT
CATTTTTTACATGAAGTGATCATTTGCGGTGACTCGAGTCTAACATCATTATGAAGCAAA
ACGTGCGAAAGACTAACTTTATTTTTCTATCAGCTGGTATAATATTAATCGTTACCGGCG
CGTGTATATCAATCTTTTGGCCTGCGCTCTTTAAGACTTTTCTTTTTAGTGAACTCACAT
TAAGCGCAACTTCAAAATCATATGCTGAATGGAAGAGACCAAGCGTGGAGCTCTATTTTG
ATGTCTATCTATTCAATTGGACTAATTCATACAAATTCATTTATCCAGACTTTGAGAAGC
CAATTTTTACAGAACATGGACCGTATAGATTTCGAGAGATTCGTGACAAAGTTGACATTG
AGTTCAACAATAATTCTACTGTTAGTTATCGTCTGTTGAACAATTATTATTTTGATGAAG
AGAGCAGTCTTGGGTCGCTTGATGATGTCATTACAAATGTTAATATGGTTGCATTAGGTG
CTGCAGCTCAATCGATAAATTTTGAATATCAAAAGAGAAAAGTCATTTCACAAGTACTCA
ACGGATATTATGAAGAAAATATTTTTGTATCAAAAACAGCAAGAGAATTGCTATTTGAAG
GTTACGAAGATGATATGGTGACAATGGGAAAGATGTCTAATGTAGCTGGCTTCGATATGA
GTGCTATTCCATATGATAAAGTTGGATGGTTTTAT
>g10751.t2 Gene=g10751 Length=215
MKQNVRKTNFIFLSAGIILIVTGACISIFWPALFKTFLFSELTLSATSKSYAEWKRPSVE
LYFDVYLFNWTNSYKFIYPDFEKPIFTEHGPYRFREIRDKVDIEFNNNSTVSYRLLNNYY
FDEESSLGSLDDVITNVNMVALGAAAQSINFEYQKRKVISQVLNGYYEENIFVSKTAREL
LFEGYEDDMVTMGKMSNVAGFDMSAIPYDKVGWFY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g10751.t2 | PANTHER | PTHR11923 | SCAVENGER RECEPTOR CLASS B TYPE-1 SR-B1 | 2 | 215 | 6.7E-54 |
| 3 | g10751.t2 | PANTHER | PTHR11923:SF93 | GH07959P-RELATED | 2 | 215 | 6.7E-54 |
| 5 | g10751.t2 | PRINTS | PR01609 | Adhesion molecule CD36 family signature | 56 | 77 | 2.4E-6 |
| 4 | g10751.t2 | PRINTS | PR01609 | Adhesion molecule CD36 family signature | 110 | 129 | 2.4E-6 |
| 1 | g10751.t2 | Pfam | PF01130 | CD36 family | 15 | 215 | 7.0E-52 |
| 8 | g10751.t2 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 11 | - |
| 10 | g10751.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 12 | 33 | - |
| 9 | g10751.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 34 | 215 | - |
| 7 | g10751.t2 | ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 25 | 7.0 |
| 6 | g10751.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 12 | 34 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed