General information for g10751.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein peste.
Parent gene
- The parent gene g10751 is located on chr_1: 11716765..11718588 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10751 | g10751.t3 | isoform | g10751.t3 | 11715714 | 11718588 |
| chr_1 | g10751 | g10751.t3 | exon | g10751.t3.exon1 | 11715714 | 11715836 |
| chr_1 | g10751 | g10751.t3 | exon | g10751.t3.exon2 | 11716687 | 11716888 |
| chr_1 | g10751 | g10751.t3 | exon | g10751.t3.exon3 | 11717014 | 11717481 |
| chr_1 | g10751 | g10751.t3 | cds | g10751.t3.CDS1 | 11717248 | 11717481 |
| chr_1 | g10751 | g10751.t3 | exon | g10751.t3.exon4 | 11717618 | 11718118 |
| chr_1 | g10751 | g10751.t3 | cds | g10751.t3.CDS2 | 11717618 | 11718118 |
| chr_1 | g10751 | g10751.t3 | exon | g10751.t3.exon5 | 11718178 | 11718588 |
| chr_1 | g10751 | g10751.t3 | cds | g10751.t3.CDS3 | 11718178 | 11718588 |
| chr_1 | g10751 | g10751.t3 | TTS | g10751.t3 | 11718675 | 11718675 |
| chr_1 | g10751 | g10751.t3 | TSS | g10751.t3 | NA | NA |
Sequences
>g10751.t3 Gene=g10751 Length=1705
GGTAAGTATGCAAGCTTAATTGATTGACTCGCTGTGCATGCACTCAATCGAGCTTCAGTC
TGAAACTTTTCTTCGTTTGGAACAGACACATTCGCGTGAATTTTCAGTGTCATTCATAAA
AGTATTTCTTCACTTTATATGCATCTCATCTCATTTTTTACATGAAGTGATCATTTGCGG
TGACTCGAGTCTAACATCATTATGAAGCAAAACGTGCGAAAGACTAACTTTATTTTTCTA
TCAGCTGGTATAATATTAATCGTTACCGGCGCGTGTATATCAATCTTTTGGCCTGCGCTC
TTTAAGACTTTTCTTTTTAGTGTAACTCTATTTTGATGTCTATCTATTCAATTGGACTAA
TTCATACAAATTCATTTATCCAGACTTTGAGAAGCCAATTTTTACAGAACATGGACCGTA
TAGATTTCGAGAGATTCGTGACAAAGTTGACATTGAGTTCAACAATAATTCTACTGTTAG
TTATCGTCTGTTGAACAATTATTATTTTGATGAAGAGAGCAGTCTTGGGTCGCTTGATGA
TGTCATTACAAATGTTAATATGGTTGCATTAGGTGCTGCAGCTCAATCGATAAATTTTGA
ATATCAAAAGAGAAAAGTCATTTCACAAGTACTCAACGGATATTATGAAGAAAATATTTT
TGTATCAAAAACAGCAAGAGAATTGCTATTTGAAGGTTACGAAGATGATATGGTGACAAT
GGGAAAGATGTCTAATGTAGCTGGCTTCGATATGAGTGCTATTCCATATGATAAAGTTGG
ATGGTTTTATCTAAGAAATGCTACAAACAAGTTAAGTGGCTATTATAATGTTCATACATC
AAGTTCAAAAGCAGGCACAATAGCAAATTATAATAGTCTCGATCATATTCAAATTTATCG
TGGTGAATGCTCAAAACTTCAAGGTTCAACTGGTGAATTTTTTCCACCCGGTAGATCTCG
AGATTCAATTCAATTGTTTGCTCCAGATATGTGTCGATCAATTGTGTTTGATTATGAACA
AGATATTGACATTCATGGTGTCATTGGTTATCGATATGCAGCAGGCAAAAGAGCAGTAGA
TAATGGTAAAAAGTATGCAGAAAACTTGTGTTATAGTGAAGGCAGTGAATTTGAAGTTCC
ATCAGGTGTCATGAATATTTCAGCATGTCGCTATTCATCTCCAATTTTCATGTCTTATCC
ACATTTTTATGAAGCTGATTCTTTATTTCTGAGTGAAATTGAAGGACTTAATCCACAAAA
AGACAAACATCAATCTTATATTACGATTGAACCAACAACAGGCATTCCATTAGAGGTTGT
TATAAGATTTCAAGCAAATTTCCTTATTCAGCAAATTGAAGATATTTCCTTATATCAACT
TTATCCAACAAAATTCGTTCCAGCAATGTGGGTTGAACAAAAATTTAGGATTGATGAGGA
AATGGCATCTCAGCTAAGAATAGCATTAAAAATTCCAGCTATTGGACAAGTGATTGGTGT
GATAATTTTTGCTTTAGGATTTGCTTTTGTAATTATTTCAAGTATTGTTAAATGCCTTAG
CAGTAAAACACAATCAAATGAACAACAAGAGATACATTTATCTGATGTGAAAAATGGTAA
TAGAAGACAGAAAGAAACGTCTTCACCACTTCTTGATGCAAATGGCAAAAAAGTTGTTAT
AAAGAAAATGGAAAGTGTTGAATAG
>g10751.t3 Gene=g10751 Length=381
MVALGAAAQSINFEYQKRKVISQVLNGYYEENIFVSKTARELLFEGYEDDMVTMGKMSNV
AGFDMSAIPYDKVGWFYLRNATNKLSGYYNVHTSSSKAGTIANYNSLDHIQIYRGECSKL
QGSTGEFFPPGRSRDSIQLFAPDMCRSIVFDYEQDIDIHGVIGYRYAAGKRAVDNGKKYA
ENLCYSEGSEFEVPSGVMNISACRYSSPIFMSYPHFYEADSLFLSEIEGLNPQKDKHQSY
ITIEPTTGIPLEVVIRFQANFLIQQIEDISLYQLYPTKFVPAMWVEQKFRIDEEMASQLR
IALKIPAIGQVIGVIIFALGFAFVIISSIVKCLSSKTQSNEQQEIHLSDVKNGNRRQKET
SSPLLDANGKKVVIKKMESVE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g10751.t3 | PANTHER | PTHR11923 | SCAVENGER RECEPTOR CLASS B TYPE-1 SR-B1 | 2 | 344 | 2.4E-103 |
| 3 | g10751.t3 | PANTHER | PTHR11923:SF93 | GH07959P-RELATED | 2 | 344 | 2.4E-103 |
| 6 | g10751.t3 | PRINTS | PR01609 | Adhesion molecule CD36 family signature | 117 | 141 | 2.1E-19 |
| 5 | g10751.t3 | PRINTS | PR01609 | Adhesion molecule CD36 family signature | 192 | 216 | 2.1E-19 |
| 4 | g10751.t3 | PRINTS | PR01609 | Adhesion molecule CD36 family signature | 239 | 260 | 2.1E-19 |
| 1 | g10751.t3 | Pfam | PF01130 | CD36 family | 3 | 329 | 8.1E-91 |
| 9 | g10751.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 306 | - |
| 10 | g10751.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 307 | 330 | - |
| 8 | g10751.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 331 | 381 | - |
| 7 | g10751.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 308 | 330 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed