General information for g10775.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g10775 is located on chr_1: 11901559..11902296 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10775 | g10775.t2 | isoform | g10775.t2 | 11900461 | 11902296 |
| chr_1 | g10775 | g10775.t2 | exon | g10775.t2.exon1 | 11900461 | 11902296 |
| chr_1 | g10775 | g10775.t2 | cds | g10775.t2.CDS1 | 11900461 | 11902296 |
| chr_1 | g10775 | g10775.t2 | TSS | g10775.t2 | NA | NA |
| chr_1 | g10775 | g10775.t2 | TTS | g10775.t2 | NA | NA |
Sequences
>g10775.t2 Gene=g10775 Length=1836
ATGAGCATTTTTGCGAATGAAAAATTTTATCGCAATTCTTGCAAAAAAATTAACAATGAG
TTAGTTGCAGCAGTTGATGAAATTATCGAGAAAGTTTTTGTTCCTAAATATCGATCAATA
AATTTAATTTTGGCTTTTGATAATCTTTATGACTGCTACATGATAGATTTTAAAAGTGAA
CTTCTCAAACGAAATTCTAAAAGAGTATATAGCGTTCGACTGTTGAACCATACTGATATT
CCTAAAATTTCATCACGTTTGAGAACTATGAATATAATTTTACTTGATAATTTGAAAACA
TTTGAAAAACTTTATCCAAAAATTACTCCTGAAGTATTTGATTTTCGTGGCTATTACTTG
TTTGTTTTATTAGAAGGAAAAACTGATTTCATGTCAGATATTTTTTCAAAAATGTGGAAC
AAATGGATTTATAATGTAAATGCTATATATGAATGCTCTGGAACAATACTCATTTCAACA
TTTAGACCATTTGATAAAGATTCATGCTACGAAATTTCACCAGAAATAATTAATCAATAT
GTGAATGCCAATTTTCTGAATGGAAATCAATCTTTGGATTTGTATCCAAATAAATTTGAA
AATTTATGGAAATGTGAGATTAGAGTTGTTACATTAAATAGATGTCCAGCAGTTTGTGAA
AGAAAAAAATCAAAGACAATATATGGACATGATTGGGATTTGATAGTTGAACTTTCGAAA
CTTTTAAATTTTACAATTAAATTAAAATTTTTGAAAGATTCTGATAAGCTTCAAAATTTA
ACATCACTTGTTGCAGTTAGTATTTTGATGAAAGGTGAAGCTGATATTTTAATTGGAAAT
TATTATTTGCGAACAGAATACATAAATAAAATGGATATGAGTGATAGTTATGATAGTATT
CCAATGATTTTTGCAATCCCAAATGGCAAACTTTATTCGCCATTCGAAAAACTTTTACAA
CCGTTTGAAATAATTGTTTGGATATTACTCATTTGCACATTTTCAATTGGTATTTTAGTG
ATTATAATCATAGAATTTAAAATTAAACATGTAAGAAGTTTTGTTTATGGTGAAAAAGTC
AATGCACCAATTTTAAACATGATTATTGCTATCTTTGGATCACAGCAACCAATACTGCCT
AAAAGGAATTTTGCACGATTTATACTCATGATGTTTTTGATATTTTGTCTAGTGCAAAGA
AATGTCTATCAAGGTGCGCTTTATATTTTCTTACAATCTGATGGCCGACATAAACCAATG
CAAACAATTAATGAAATGATTGAAAATGATTTTGTATTTTATATGCATTCACGATTTATT
GAATTAGTACAAGACCATAAAGAGATTTTCATAAGAAAAAAAATTGCAAATAATGATAAT
GAATTGCCATTTAGTAAGCCAGTGGATGACAACCTTCATGCTGCTTATTTGACTACTGAA
GACGAAATCATGTATCGTAATAAGAAAACACACAAACAATATGTTTTAAAAGTCTGTGAT
GAACGTTTCACGCTTATTGATATTGTCATGTATTATCAAAAAAACTTTTACTTAAAAAAA
TCTATAGATCAAAGAATTAGTCAATTACTTAGTTCTGGCATTTTACATCATTGGATTGAG
AAATATATCGAAGAACGTTTTCTTAATGTCAAAGAAGTAAGTGAATTGAAACAACTCACG
GTTCATCATTTATTCGGAGTATTCAATATTCTACTAATTGGACTTGCTATTGCGTGCATT
TCTCTTATTATCGAAATTACCATATCAAAGGTAAAAGTGTACAATCGAGCAAAGAAATCG
ATACGAAAGAAAGGCCTAAAACGTGATGCTAAATGA
>g10775.t2 Gene=g10775 Length=611
MSIFANEKFYRNSCKKINNELVAAVDEIIEKVFVPKYRSINLILAFDNLYDCYMIDFKSE
LLKRNSKRVYSVRLLNHTDIPKISSRLRTMNIILLDNLKTFEKLYPKITPEVFDFRGYYL
FVLLEGKTDFMSDIFSKMWNKWIYNVNAIYECSGTILISTFRPFDKDSCYEISPEIINQY
VNANFLNGNQSLDLYPNKFENLWKCEIRVVTLNRCPAVCERKKSKTIYGHDWDLIVELSK
LLNFTIKLKFLKDSDKLQNLTSLVAVSILMKGEADILIGNYYLRTEYINKMDMSDSYDSI
PMIFAIPNGKLYSPFEKLLQPFEIIVWILLICTFSIGILVIIIIEFKIKHVRSFVYGEKV
NAPILNMIIAIFGSQQPILPKRNFARFILMMFLIFCLVQRNVYQGALYIFLQSDGRHKPM
QTINEMIENDFVFYMHSRFIELVQDHKEIFIRKKIANNDNELPFSKPVDDNLHAAYLTTE
DEIMYRNKKTHKQYVLKVCDERFTLIDIVMYYQKNFYLKKSIDQRISQLLSSGILHHWIE
KYIEERFLNVKEVSELKQLTVHHLFGVFNILLIGLAIACISLIIEITISKVKVYNRAKKS
IRKKGLKRDAK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g10775.t2 | Gene3D | G3DSA:3.40.190.10 | - | 227 | 557 | 7.5E-34 |
| 10 | g10775.t2 | Gene3D | G3DSA:3.40.190.10 | - | 301 | 508 | 7.5E-34 |
| 8 | g10775.t2 | Gene3D | G3DSA:1.10.287.70 | - | 309 | 585 | 7.5E-34 |
| 2 | g10775.t2 | PANTHER | PTHR42643:SF16 | IONOTROPIC RECEPTOR 11A-RELATED | 77 | 599 | 1.0E-57 |
| 3 | g10775.t2 | PANTHER | PTHR42643 | IONOTROPIC RECEPTOR 20A-RELATED | 77 | 599 | 1.0E-57 |
| 1 | g10775.t2 | Pfam | PF00060 | Ligand-gated ion channel | 326 | 575 | 1.7E-7 |
| 15 | g10775.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 323 | - |
| 18 | g10775.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 324 | 348 | - |
| 11 | g10775.t2 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 349 | 359 | - |
| 17 | g10775.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 360 | 378 | - |
| 14 | g10775.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 379 | 383 | - |
| 16 | g10775.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 384 | 411 | - |
| 12 | g10775.t2 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 412 | 563 | - |
| 19 | g10775.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 564 | 584 | - |
| 13 | g10775.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 585 | 611 | - |
| 7 | g10775.t2 | SUPERFAMILY | SSF53850 | Periplasmic binding protein-like II | 205 | 544 | 7.41E-16 |
| 4 | g10775.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 324 | 346 | - |
| 5 | g10775.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 384 | 403 | - |
| 6 | g10775.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 567 | 589 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0015276 | ligand-gated ion channel activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed