Gene loci information

Transcript annotation

  • This transcript has been annotated as Annexin B9.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10800 g10800.t112 isoform g10800.t112 12052735 12055446
chr_1 g10800 g10800.t112 exon g10800.t112.exon1 12052735 12052867
chr_1 g10800 g10800.t112 exon g10800.t112.exon2 12052960 12053108
chr_1 g10800 g10800.t112 exon g10800.t112.exon3 12053171 12053303
chr_1 g10800 g10800.t112 cds g10800.t112.CDS1 12053294 12053303
chr_1 g10800 g10800.t112 exon g10800.t112.exon4 12053376 12053508
chr_1 g10800 g10800.t112 cds g10800.t112.CDS2 12053376 12053508
chr_1 g10800 g10800.t112 exon g10800.t112.exon5 12053572 12053869
chr_1 g10800 g10800.t112 cds g10800.t112.CDS3 12053572 12053869
chr_1 g10800 g10800.t112 exon g10800.t112.exon6 12055388 12055446
chr_1 g10800 g10800.t112 cds g10800.t112.CDS4 12055388 12055417
chr_1 g10800 g10800.t112 TSS g10800.t112 12055446 12055446
chr_1 g10800 g10800.t112 TTS g10800.t112 NA NA

Sequences

>g10800.t112 Gene=g10800 Length=905
AGTCGTATTAATTGTAAAGAGCAGCGAAAATGAGTTCAGCAGCCTACTATCCATTCCAAT
GCAAACCAACCGTTTACCCTGCCGATCCTTTTGACCCAAATGAAGATGCAGGTATCTTGA
GAAAGGCAATGAAAGGATTTGGAACTGATGAAAAGGCAATTATTGAAGTGCTTGCTCGTC
GTGGAATTGTTCAACGTCTTGAGATTGCTTCGGCATATAAGACCAACTTTGGCAAGGATT
TGATTAATGATTTGAAAAGTGAACTTGGTGGCAAGTTTGAAGATGTCATTCTTGCTTTGA
TGACTCCTTTGCCGCAATTCTATGCAAAGGAATTGCATGATGCAATTTCCGGCATTGGAA
CTGACGAAGACGCTATCATCGAAATTCTCTGCACACTCTCCAACTATGGCATTCGTACAA
TTGCAGAATTCTACGAACAACTGTATGGAAATTCACTCGAAAGCGACTTGAAGGGAGACA
CCTCAGGTTTGATTCTTTAAGCGTTTATGCGTATCATTAGTGCAAGGCAATCGCGATGAA
AACAATGGTGTTGATCAAGGTTCTGCTCTTGCTGATGCTACTGCACTTTATGAAGCCGGT
GAAGGACAATGGGGCACTGATGAGTCAGTTTTCAATCAAATTCTTGTAACCAGATCATAC
CAACAATTGAGACAAGTCTTTTTGGAATATGAGGCTATGAGCGGCCACGACATTGAAAAA
GCTATCAAGCGTGAATTCTCAGGAAACGCTGAAAAAGGATTCCTCGCAATCGCCAAGGTT
GTCAAATCAAAGGTTGATTTCTTTGCTGAAAAACTCTACGAGAGCATGAAGGGCTTAGGT
ACGAATGACAAGACATTGATTCGTATCATTGTTTCACGCTCAGAAATTGATTTGGGTGAC
ATCAA

>g10800.t112 Gene=g10800 Length=156
MSSAAYYPFQCKPTVYPADPFDPNEDAGILRKAMKGFGTDEKAIIEVLARRGIVQRLEIA
SAYKTNFGKDLINDLKSELGGKFEDVILALMTPLPQFYAKELHDAISGIGTDEDAIIEIL
CTLSNYGIRTIAEFYEQLYGNSLESDLKGDTSGLIL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g10800.t112 Gene3D G3DSA:1.10.220.10 - 20 92 3.0E-28
14 g10800.t112 Gene3D G3DSA:1.10.220.10 - 94 155 3.1E-21
3 g10800.t112 PANTHER PTHR10502 ANNEXIN 7 151 8.8E-58
4 g10800.t112 PANTHER PTHR10502:SF212 ANNEXIN B9 7 151 8.8E-58
11 g10800.t112 PRINTS PR00196 Annexin family signature 35 57 2.6E-24
6 g10800.t112 PRINTS PR00200 Annexin type IV signature 46 55 7.8E-5
8 g10800.t112 PRINTS PR00200 Annexin type IV signature 57 67 7.8E-5
9 g10800.t112 PRINTS PR00196 Annexin family signature 75 91 2.6E-24
5 g10800.t112 PRINTS PR00200 Annexin type IV signature 85 100 7.8E-5
10 g10800.t112 PRINTS PR00196 Annexin family signature 102 123 2.6E-24
7 g10800.t112 PRINTS PR00200 Annexin type IV signature 127 141 7.8E-5
1 g10800.t112 Pfam PF00191 Annexin 26 90 5.4E-23
2 g10800.t112 Pfam PF00191 Annexin 98 153 2.0E-19
15 g10800.t112 ProSitePatterns PS00223 Annexin repeat signature. 38 90 -
19 g10800.t112 ProSiteProfiles PS51897 Annexin repeat profile. 21 92 26.995
18 g10800.t112 ProSiteProfiles PS51897 Annexin repeat profile. 93 156 23.154
16 g10800.t112 SMART SM00335 annex3 38 90 4.1E-22
17 g10800.t112 SMART SM00335 annex3 110 156 2.8E-12
12 g10800.t112 SUPERFAMILY SSF47874 Annexin 6 153 4.58E-54

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values