Gene loci information

Transcript annotation

  • This transcript has been annotated as Annexin B9.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10800 g10800.t113 isoform g10800.t113 12052735 12057184
chr_1 g10800 g10800.t113 exon g10800.t113.exon1 12052735 12052867
chr_1 g10800 g10800.t113 exon g10800.t113.exon2 12052960 12053303
chr_1 g10800 g10800.t113 cds g10800.t113.CDS1 12053143 12053303
chr_1 g10800 g10800.t113 exon g10800.t113.exon3 12053380 12053508
chr_1 g10800 g10800.t113 cds g10800.t113.CDS2 12053380 12053508
chr_1 g10800 g10800.t113 exon g10800.t113.exon4 12053572 12053869
chr_1 g10800 g10800.t113 cds g10800.t113.CDS3 12053572 12053869
chr_1 g10800 g10800.t113 exon g10800.t113.exon5 12055388 12055446
chr_1 g10800 g10800.t113 cds g10800.t113.CDS4 12055388 12055417
chr_1 g10800 g10800.t113 exon g10800.t113.exon6 12057132 12057184
chr_1 g10800 g10800.t113 TSS g10800.t113 12057215 12057215
chr_1 g10800 g10800.t113 TTS g10800.t113 NA NA

Sequences

>g10800.t113 Gene=g10800 Length=1016
TAAAAACGTAAGTGATCACTTTCAAGTGTAATAAAAGTTAAATTTATCTTAAAAGTCGTA
TTAATTGTAAAGAGCAGCGAAAATGAGTTCAGCAGCCTACTATCCATTCCAATGCAAACC
AACCGTTTACCCTGCCGATCCTTTTGACCCAAATGAAGATGCAGGTATCTTGAGAAAGGC
AATGAAAGGATTTGGAACTGATGAAAAGGCAATTATTGAAGTGCTTGCTCGTCGTGGAAT
TGTTCAACGTCTTGAGATTGCTTCGGCATATAAGACCAACTTTGGCAAGGATTTGATTAA
TGATTTGAAAAGTGAACTTGGTGGCAAGTTTGAAGATGTCATTCTTGCTTTGATGACTCC
TTTGCCGCAATTCTATGCAAAGGAATTGCATGATGCAATTTCCGGCATTGGAACTGACGA
AGACGCTATCATCGAAATTCTCTGCACACTCTCCAACTATGGCATTCGTACAATTGCAGA
ATTCTACGAACAACTGTATGGAAATTCACTCGAAAGCGACTTGAAGGGAGACACCTCAGG
ATTCTTTAAGCGTTTATGCGTATCATTAGTGCAAGGCAATCGCGATGAAAACAATGGTGT
TGATCAAGGTTCTGCTCTTGCTGATGCTACTGCACTTTATGAAGCCGGTGAAGGACAATG
GGGCACTGATGAGTATTTTTTTTTAAAAAATTTGAAATGAATTGTTTAAGCATAAATGTT
TATTTTTTCAATAGGTCAGTTTTCAATCAAATTCTTGTAACCAGATCATACCAACAATTG
AGACAAGTCTTTTTGGAATATGAGGCTATGAGCGGCCACGACATTGAAAAAGCTATCAAG
CGTGAATTCTCAGGAAACGCTGAAAAAGGATTCCTCGCAATCGCCAAGGTTGTCAAATCA
AAGGTTGATTTCTTTGCTGAAAAACTCTACGAGAGCATGAAGGGCTTAGGTACGAATGAC
AAGACATTGATTCGTATCATTGTTTCACGCTCAGAAATTGATTTGGGTGACATCAA

>g10800.t113 Gene=g10800 Length=205
MSSAAYYPFQCKPTVYPADPFDPNEDAGILRKAMKGFGTDEKAIIEVLARRGIVQRLEIA
SAYKTNFGKDLINDLKSELGGKFEDVILALMTPLPQFYAKELHDAISGIGTDEDAIIEIL
CTLSNYGIRTIAEFYEQLYGNSLESDLKGDTSGFFKRLCVSLVQGNRDENNGVDQGSALA
DATALYEAGEGQWGTDEYFFLKNLK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g10800.t113 Gene3D G3DSA:1.10.220.10 - 20 92 5.6E-28
10 g10800.t113 Gene3D G3DSA:1.10.220.10 - 94 165 2.9E-26
11 g10800.t113 Gene3D G3DSA:1.10.220.10 - 166 204 2.5E-6
3 g10800.t113 PANTHER PTHR10502 ANNEXIN 7 200 1.9E-77
4 g10800.t113 PANTHER PTHR10502:SF212 ANNEXIN B9 7 200 1.9E-77
8 g10800.t113 PRINTS PR00196 Annexin family signature 35 57 1.1E-32
5 g10800.t113 PRINTS PR00196 Annexin family signature 75 91 1.1E-32
6 g10800.t113 PRINTS PR00196 Annexin family signature 102 123 1.1E-32
7 g10800.t113 PRINTS PR00196 Annexin family signature 185 205 1.1E-32
2 g10800.t113 Pfam PF00191 Annexin 26 90 9.8E-23
1 g10800.t113 Pfam PF00191 Annexin 98 162 1.1E-22
13 g10800.t113 ProSitePatterns PS00223 Annexin repeat signature. 38 90 -
17 g10800.t113 ProSiteProfiles PS51897 Annexin repeat profile. 21 92 26.995
16 g10800.t113 ProSiteProfiles PS51897 Annexin repeat profile. 93 164 27.041
15 g10800.t113 SMART SM00335 annex3 38 90 4.1E-22
14 g10800.t113 SMART SM00335 annex3 110 162 3.3E-21
9 g10800.t113 SUPERFAMILY SSF47874 Annexin 6 201 5.37E-71

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values