General information for g10800.t116
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Annexin B9.
Parent gene
- The parent gene g10800 is located on chr_1: 12053250..12057223 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10800 | g10800.t116 | isoform | g10800.t116 | 12052820 | 12057223 |
| chr_1 | g10800 | g10800.t116 | exon | g10800.t116.exon1 | 12052820 | 12052867 |
| chr_1 | g10800 | g10800.t116 | cds | g10800.t116.CDS1 | 12052821 | 12052867 |
| chr_1 | g10800 | g10800.t116 | exon | g10800.t116.exon2 | 12052960 | 12053108 |
| chr_1 | g10800 | g10800.t116 | cds | g10800.t116.CDS2 | 12052960 | 12053108 |
| chr_1 | g10800 | g10800.t116 | exon | g10800.t116.exon3 | 12053171 | 12053303 |
| chr_1 | g10800 | g10800.t116 | cds | g10800.t116.CDS3 | 12053171 | 12053303 |
| chr_1 | g10800 | g10800.t116 | exon | g10800.t116.exon4 | 12053380 | 12053496 |
| chr_1 | g10800 | g10800.t116 | cds | g10800.t116.CDS4 | 12053380 | 12053496 |
| chr_1 | g10800 | g10800.t116 | exon | g10800.t116.exon5 | 12053568 | 12053869 |
| chr_1 | g10800 | g10800.t116 | cds | g10800.t116.CDS5 | 12053568 | 12053592 |
| chr_1 | g10800 | g10800.t116 | exon | g10800.t116.exon6 | 12055388 | 12055446 |
| chr_1 | g10800 | g10800.t116 | exon | g10800.t116.exon7 | 12057132 | 12057223 |
| chr_1 | g10800 | g10800.t116 | TSS | g10800.t116 | 12057215 | 12057215 |
| chr_1 | g10800 | g10800.t116 | TTS | g10800.t116 | NA | NA |
Sequences
>g10800.t116 Gene=g10800 Length=900
ATTCTCTCAGTTTCAATTTGAACTTCGAGTGAGTAAGATTAAAAACGTAAGTGATCACTT
TCAAGTGTAATAAAAGTTAAATTTATCTTAAAAGTCGTATTAATTGTAAAGAGCAGCGAA
AATGAGTTCAGCAGCCTACTATCCATTCCAATGCAAACCAACCGTTTACCCTGCCGATCC
TTTTGACCCAAATGAAGATGCAGGTATCTTGAGAAAGGCAATGAAAGGATTTGGAACTGA
TGAAAAGGCAATTATTGAAGTGCTTGCTCGTCGTGGAATTGTTCAACGTCTTGAGATTGC
TTCGGCATATAAGACCAACTTTGGCAAGGATTTGATTAATGATTTGAAAAGTGAACTTGG
TGGCAAGTTTGAAGATGTCATTCTTGCTTTGATGACTCCTTTGCCGCAATTCTATGCAAA
GGAATTGCATGATGCAATTTCCGGCATTGGTAAACGCTATCATCGAAATTCTCTGCACAC
TCTCCAACTATGGCATTCGTACAATTGCAGAATTCTACGAACAACTGTATGGAAATTCAC
TCGAAAGCGACTTGAAGGGAGACACCTCAGGATTCTTTAAGCGTTTATGCGTATCATTAG
TGCAAGGCAATCGCGATGAAAACAATGGTGTTGATCAAGGTTCTGCTCTTGCTGATGCTA
CTGCACTTTATGAAGCCGGTGAAGGACAATGGGGCACTGATGAGTCAGTTTTCAATCAAA
TTCTTGTAACCAGATCATACCAACAATTGAGACAAGTCTTTTTGGAATATGAGGCTATGA
GCGGCCACGACATTGAAAAAGCTATCAAGCGTGAATTCTCAGGAAACGCTGAAAAAGGAT
TCCTCGCAATCGCCAAGGTTGTCAAATCAAAGGTTGATTTCTTTGCTGAAAAACTCTACG
>g10800.t116 Gene=g10800 Length=157
MMQFPALVNAIIEILCTLSNYGIRTIAEFYEQLYGNSLESDLKGDTSGFFKRLCVSLVQG
NRDENNGVDQGSALADATALYEAGEGQWGTDESVFNQILVTRSYQQLRQVFLEYEAMSGH
DIEKAIKREFSGNAEKGFLAIAKVVKSKVDFFAEKLY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g10800.t116 | Gene3D | G3DSA:1.10.220.10 | - | 8 | 61 | 1.6E-16 |
| 10 | g10800.t116 | Gene3D | G3DSA:1.10.220.10 | - | 62 | 147 | 5.6E-31 |
| 3 | g10800.t116 | PANTHER | PTHR10502 | ANNEXIN | 9 | 157 | 5.5E-56 |
| 4 | g10800.t116 | PANTHER | PTHR10502:SF212 | ANNEXIN B9 | 9 | 157 | 5.5E-56 |
| 1 | g10800.t116 | Pfam | PF00191 | Annexin | 9 | 57 | 8.9E-15 |
| 2 | g10800.t116 | Pfam | PF00191 | Annexin | 76 | 141 | 4.0E-24 |
| 8 | g10800.t116 | ProSitePatterns | PS00223 | Annexin repeat signature. | 89 | 141 | - |
| 11 | g10800.t116 | ProSiteProfiles | PS51897 | Annexin repeat profile. | 1 | 59 | 15.479 |
| 12 | g10800.t116 | ProSiteProfiles | PS51897 | Annexin repeat profile. | 71 | 143 | 27.356 |
| 7 | g10800.t116 | SMART | SM00335 | annex3 | 8 | 57 | 9.4E-14 |
| 6 | g10800.t116 | SMART | SM00335 | annex3 | 89 | 141 | 5.4E-20 |
| 5 | g10800.t116 | SUPERFAMILY | SSF47874 | Annexin | 9 | 157 | 5.24E-51 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005544 | calcium-dependent phospholipid binding | MF |
| GO:0005509 | calcium ion binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed