General information for g10800.t117
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Annexin B9.
Parent gene
- The parent gene g10800 is located on chr_1: 12053250..12057223 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10800 | g10800.t117 | isoform | g10800.t117 | 12052820 | 12057223 |
| chr_1 | g10800 | g10800.t117 | exon | g10800.t117.exon1 | 12052820 | 12052867 |
| chr_1 | g10800 | g10800.t117 | cds | g10800.t117.CDS1 | 12052821 | 12052867 |
| chr_1 | g10800 | g10800.t117 | exon | g10800.t117.exon2 | 12052960 | 12053108 |
| chr_1 | g10800 | g10800.t117 | cds | g10800.t117.CDS2 | 12052960 | 12053108 |
| chr_1 | g10800 | g10800.t117 | exon | g10800.t117.exon3 | 12053171 | 12053303 |
| chr_1 | g10800 | g10800.t117 | cds | g10800.t117.CDS3 | 12053171 | 12053303 |
| chr_1 | g10800 | g10800.t117 | exon | g10800.t117.exon4 | 12053380 | 12053499 |
| chr_1 | g10800 | g10800.t117 | cds | g10800.t117.CDS4 | 12053380 | 12053499 |
| chr_1 | g10800 | g10800.t117 | exon | g10800.t117.exon5 | 12053568 | 12053869 |
| chr_1 | g10800 | g10800.t117 | cds | g10800.t117.CDS5 | 12053568 | 12053592 |
| chr_1 | g10800 | g10800.t117 | exon | g10800.t117.exon6 | 12055388 | 12055446 |
| chr_1 | g10800 | g10800.t117 | exon | g10800.t117.exon7 | 12057132 | 12057223 |
| chr_1 | g10800 | g10800.t117 | TSS | g10800.t117 | 12057215 | 12057215 |
| chr_1 | g10800 | g10800.t117 | TTS | g10800.t117 | NA | NA |
Sequences
>g10800.t117 Gene=g10800 Length=903
ATTCTCTCAGTTTCAATTTGAACTTCGAGTGAGTAAGATTAAAAACGTAAGTGATCACTT
TCAAGTGTAATAAAAGTTAAATTTATCTTAAAAGTCGTATTAATTGTAAAGAGCAGCGAA
AATGAGTTCAGCAGCCTACTATCCATTCCAATGCAAACCAACCGTTTACCCTGCCGATCC
TTTTGACCCAAATGAAGATGCAGGTATCTTGAGAAAGGCAATGAAAGGATTTGGAACTGA
TGAAAAGGCAATTATTGAAGTGCTTGCTCGTCGTGGAATTGTTCAACGTCTTGAGATTGC
TTCGGCATATAAGACCAACTTTGGCAAGGATTTGATTAATGATTTGAAAAGTGAACTTGG
TGGCAAGTTTGAAGATGTCATTCTTGCTTTGATGACTCCTTTGCCGCAATTCTATGCAAA
GGAATTGCATGATGCAATTTCCGGCATTGGTAAAAGACGCTATCATCGAAATTCTCTGCA
CACTCTCCAACTATGGCATTCGTACAATTGCAGAATTCTACGAACAACTGTATGGAAATT
CACTCGAAAGCGACTTGAAGGGAGACACCTCAGGATTCTTTAAGCGTTTATGCGTATCAT
TAGTGCAAGGCAATCGCGATGAAAACAATGGTGTTGATCAAGGTTCTGCTCTTGCTGATG
CTACTGCACTTTATGAAGCCGGTGAAGGACAATGGGGCACTGATGAGTCAGTTTTCAATC
AAATTCTTGTAACCAGATCATACCAACAATTGAGACAAGTCTTTTTGGAATATGAGGCTA
TGAGCGGCCACGACATTGAAAAAGCTATCAAGCGTGAATTCTCAGGAAACGCTGAAAAAG
GATTCCTCGCAATCGCCAAGGTTGTCAAATCAAAGGTTGATTTCTTTGCTGAAAAACTCT
ACG
>g10800.t117 Gene=g10800 Length=158
MMQFPALVKDAIIEILCTLSNYGIRTIAEFYEQLYGNSLESDLKGDTSGFFKRLCVSLVQ
GNRDENNGVDQGSALADATALYEAGEGQWGTDESVFNQILVTRSYQQLRQVFLEYEAMSG
HDIEKAIKREFSGNAEKGFLAIAKVVKSKVDFFAEKLY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g10800.t117 | Gene3D | G3DSA:1.10.220.10 | - | 6 | 62 | 7.8E-17 |
| 9 | g10800.t117 | Gene3D | G3DSA:1.10.220.10 | - | 63 | 148 | 5.7E-31 |
| 3 | g10800.t117 | PANTHER | PTHR10502 | ANNEXIN | 10 | 158 | 4.8E-56 |
| 4 | g10800.t117 | PANTHER | PTHR10502:SF212 | ANNEXIN B9 | 10 | 158 | 4.8E-56 |
| 1 | g10800.t117 | Pfam | PF00191 | Annexin | 9 | 58 | 4.9E-15 |
| 2 | g10800.t117 | Pfam | PF00191 | Annexin | 77 | 142 | 4.1E-24 |
| 8 | g10800.t117 | ProSitePatterns | PS00223 | Annexin repeat signature. | 90 | 142 | - |
| 12 | g10800.t117 | ProSiteProfiles | PS51897 | Annexin repeat profile. | 1 | 60 | 17.005 |
| 11 | g10800.t117 | ProSiteProfiles | PS51897 | Annexin repeat profile. | 72 | 144 | 27.356 |
| 6 | g10800.t117 | SMART | SM00335 | annex3 | 9 | 58 | 4.8E-14 |
| 7 | g10800.t117 | SMART | SM00335 | annex3 | 90 | 142 | 5.4E-20 |
| 5 | g10800.t117 | SUPERFAMILY | SSF47874 | Annexin | 10 | 158 | 5.5E-51 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005544 | calcium-dependent phospholipid binding | MF |
| GO:0005509 | calcium ion binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed