Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Annexin B9.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10800 g10800.t12 TTS g10800.t12 12050020 12050020
chr_1 g10800 g10800.t12 isoform g10800.t12 12050198 12053304
chr_1 g10800 g10800.t12 exon g10800.t12.exon1 12050198 12050710
chr_1 g10800 g10800.t12 cds g10800.t12.CDS1 12050657 12050710
chr_1 g10800 g10800.t12 exon g10800.t12.exon2 12052686 12052867
chr_1 g10800 g10800.t12 cds g10800.t12.CDS2 12052686 12052867
chr_1 g10800 g10800.t12 exon g10800.t12.exon3 12052960 12053108
chr_1 g10800 g10800.t12 cds g10800.t12.CDS3 12052960 12053035
chr_1 g10800 g10800.t12 exon g10800.t12.exon4 12053171 12053304
chr_1 g10800 g10800.t12 TSS g10800.t12 NA NA

Sequences

>g10800.t12 Gene=g10800 Length=978
GGATTCTTTAAGCGTTTATGCGTATCATTAGTGCAAGGCAATCGCGATGAAAACAATGGT
GTTGATCAAGGTTCTGCTCTTGCTGATGCTACTGCACTTTATGAAGCCGGTGAAGGACAA
TGGGGCACTGATGAGTCAGTTTTCAATCAAATTCTTGTAACCAGATCATACCAACAATTG
AGACAAGTCTTTTTGGAATATGAGGCTATGAGCGGCCACGACATTGAAAAAGCTATCAAG
CGTGAATTCTCAGGAAACGCTGAAAAAGGATTCCTCGCAATCGCCAAGGTTGTCAAATCA
AAGGTTGATTTCTTTGCTGAAAAACTCTACGAGAGCATGAAGGGCTTAGGTACGAATGAC
AAGACATTGATTCGTATCATTGTTTCACGCTCAGAAATTGATTTGGGTGACATCAAAGAA
GCATTTGAAGCCAAGTATGGAAAAAGCCTCGAGAGCTGGGTTAAGGAAGATTGTGGTGGC
GATCTAGGTGAATTGTTGGCCGAGCTGTGCGCATACTAAGACATCGATAAAATCAAAAAA
AGCGTAATGCAATGCTATGCAGATAAAAATGTTCGATGTGTATCAATTTTGAATGACACA
TAAATTTTTACCAATAATTTTTGAATATTAATCTATGAATGTATTTTTATTAAGTTATTT
TTTACCTTCATGTATTCAATGCACATCTTTCCCTGTGAGTTGATAAATTTTTACATATGT
AGAATTCTAAATAGAAAGAAAGAGAATTGTGCTTTAACATAATATATACCTTTCTTAACT
ATCCTTGTATTGTGTGTGTACTATTTCCTTTAATATCTGATAATGACATAAAAGATTTTT
TGGGGAAATGTCATAAAGTTATAAAATCCATACAACAATCATAATTTACTTAAAATTTAA
TTTTCAATAAATTCAATTTCACAGGATGAACTATCGAGTGATTATGAGCGAGTTATGGTT
TGCCTTCTTGGATCTTAA

>g10800.t12 Gene=g10800 Length=103
MSGHDIEKAIKREFSGNAEKGFLAIAKVVKSKVDFFAEKLYESMKGLGTNDKTLIRIIVS
RSEIDLGDIKEAFEAKYGKSLESWVKEDCGGDLGELLAELCAY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g10800.t12 Gene3D G3DSA:1.10.220.10 - 1 31 1.3E-5
9 g10800.t12 Gene3D G3DSA:1.10.220.10 - 33 102 1.2E-25
3 g10800.t12 PANTHER PTHR10502 ANNEXIN 2 100 1.6E-40
4 g10800.t12 PANTHER PTHR10502:SF212 ANNEXIN B9 2 100 1.6E-40
2 g10800.t12 Pfam PF00191 Annexin 1 25 1.4E-4
1 g10800.t12 Pfam PF00191 Annexin 35 98 1.9E-22
7 g10800.t12 ProSitePatterns PS00223 Annexin repeat signature. 48 100 -
10 g10800.t12 ProSiteProfiles PS51897 Annexin repeat profile. 1 27 11.37
11 g10800.t12 ProSiteProfiles PS51897 Annexin repeat profile. 31 102 25.791
6 g10800.t12 SMART SM00335 annex3 48 100 1.6E-18
5 g10800.t12 SUPERFAMILY SSF47874 Annexin 1 102 8.9E-35

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values