General information for g10800.t123
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Annexin B9.
Parent gene
- The parent gene g10800 is located on chr_1: 12053250..12057223 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10800 | g10800.t123 | isoform | g10800.t123 | 12053071 | 12057223 |
| chr_1 | g10800 | g10800.t123 | exon | g10800.t123.exon1 | 12053071 | 12053108 |
| chr_1 | g10800 | g10800.t123 | cds | g10800.t123.CDS1 | 12053072 | 12053108 |
| chr_1 | g10800 | g10800.t123 | exon | g10800.t123.exon2 | 12053171 | 12053234 |
| chr_1 | g10800 | g10800.t123 | cds | g10800.t123.CDS2 | 12053171 | 12053234 |
| chr_1 | g10800 | g10800.t123 | exon | g10800.t123.exon3 | 12053380 | 12053508 |
| chr_1 | g10800 | g10800.t123 | cds | g10800.t123.CDS3 | 12053380 | 12053508 |
| chr_1 | g10800 | g10800.t123 | exon | g10800.t123.exon4 | 12053572 | 12053869 |
| chr_1 | g10800 | g10800.t123 | cds | g10800.t123.CDS4 | 12053572 | 12053869 |
| chr_1 | g10800 | g10800.t123 | exon | g10800.t123.exon5 | 12055388 | 12055446 |
| chr_1 | g10800 | g10800.t123 | cds | g10800.t123.CDS5 | 12055388 | 12055417 |
| chr_1 | g10800 | g10800.t123 | exon | g10800.t123.exon6 | 12057132 | 12057223 |
| chr_1 | g10800 | g10800.t123 | TSS | g10800.t123 | 12057215 | 12057215 |
| chr_1 | g10800 | g10800.t123 | TTS | g10800.t123 | NA | NA |
Sequences
>g10800.t123 Gene=g10800 Length=680
ATTCTCTCAGTTTCAATTTGAACTTCGAGTGAGTAAGATTAAAAACGTAAGTGATCACTT
TCAAGTGTAATAAAAGTTAAATTTATCTTAAAAGTCGTATTAATTGTAAAGAGCAGCGAA
AATGAGTTCAGCAGCCTACTATCCATTCCAATGCAAACCAACCGTTTACCCTGCCGATCC
TTTTGACCCAAATGAAGATGCAGGTATCTTGAGAAAGGCAATGAAAGGATTTGGAACTGA
TGAAAAGGCAATTATTGAAGTGCTTGCTCGTCGTGGAATTGTTCAACGTCTTGAGATTGC
TTCGGCATATAAGACCAACTTTGGCAAGGATTTGATTAATGATTTGAAAAGTGAACTTGG
TGGCAAGTTTGAAGATGTCATTCTTGCTTTGATGACTCCTTTGCCGCAATTCTATGCAAA
GGAATTGCATGATGCAATTTCCGGCATTGGAACTGACGAAGACGCTATCATCGAAATTCT
CTGCACACTCTCCAACTATGGCATTCGTACAATTGCAGAATTCTACGAACAACTGTATGG
AAATTCACTCGAAAGCGACTTGAAGGGAGACACCTCAGGTTCTGCTCTTGCTGATGCTAC
TGCACTTTATGAAGCCGGTGAAGGACAATGGGGCACTGATGAGTCAGTTTTCAATCAAAT
TCTTGTAACCAGATCATACC
>g10800.t123 Gene=g10800 Length=186
MSSAAYYPFQCKPTVYPADPFDPNEDAGILRKAMKGFGTDEKAIIEVLARRGIVQRLEIA
SAYKTNFGKDLINDLKSELGGKFEDVILALMTPLPQFYAKELHDAISGIGTDEDAIIEIL
CTLSNYGIRTIAEFYEQLYGNSLESDLKGDTSGSALADATALYEAGEGQWGTDESVFNQI
LVTRSY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g10800.t123 | Gene3D | G3DSA:1.10.220.10 | - | 20 | 92 | 4.6E-28 |
| 10 | g10800.t123 | Gene3D | G3DSA:1.10.220.10 | - | 95 | 155 | 3.1E-21 |
| 11 | g10800.t123 | Gene3D | G3DSA:1.10.220.10 | - | 156 | 186 | 1.1E-8 |
| 4 | g10800.t123 | PANTHER | PTHR10502 | ANNEXIN | 7 | 186 | 1.0E-68 |
| 5 | g10800.t123 | PANTHER | PTHR10502:SF212 | ANNEXIN B9 | 7 | 186 | 1.0E-68 |
| 8 | g10800.t123 | PRINTS | PR00196 | Annexin family signature | 35 | 57 | 3.8E-24 |
| 6 | g10800.t123 | PRINTS | PR00196 | Annexin family signature | 75 | 91 | 3.8E-24 |
| 7 | g10800.t123 | PRINTS | PR00196 | Annexin family signature | 102 | 123 | 3.8E-24 |
| 3 | g10800.t123 | Pfam | PF00191 | Annexin | 26 | 90 | 8.0E-23 |
| 1 | g10800.t123 | Pfam | PF00191 | Annexin | 98 | 154 | 1.5E-19 |
| 2 | g10800.t123 | Pfam | PF00191 | Annexin | 158 | 186 | 5.3E-6 |
| 13 | g10800.t123 | ProSitePatterns | PS00223 | Annexin repeat signature. | 38 | 90 | - |
| 17 | g10800.t123 | ProSiteProfiles | PS51897 | Annexin repeat profile. | 21 | 92 | 26.995 |
| 16 | g10800.t123 | ProSiteProfiles | PS51897 | Annexin repeat profile. | 93 | 164 | 22.97 |
| 15 | g10800.t123 | SMART | SM00335 | annex3 | 38 | 90 | 4.1E-22 |
| 14 | g10800.t123 | SMART | SM00335 | annex3 | 110 | 162 | 2.3E-13 |
| 9 | g10800.t123 | SUPERFAMILY | SSF47874 | Annexin | 6 | 186 | 3.53E-64 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005544 | calcium-dependent phospholipid binding | MF |
| GO:0005509 | calcium ion binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
