Gene loci information

Transcript annotation

  • This transcript has been annotated as Annexin B9.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10800 g10800.t125 isoform g10800.t125 12053196 12055446
chr_1 g10800 g10800.t125 exon g10800.t125.exon1 12053196 12053303
chr_1 g10800 g10800.t125 cds g10800.t125.CDS1 12053197 12053303
chr_1 g10800 g10800.t125 exon g10800.t125.exon2 12053380 12053508
chr_1 g10800 g10800.t125 cds g10800.t125.CDS2 12053380 12053508
chr_1 g10800 g10800.t125 exon g10800.t125.exon3 12053572 12053869
chr_1 g10800 g10800.t125 cds g10800.t125.CDS3 12053572 12053869
chr_1 g10800 g10800.t125 exon g10800.t125.exon4 12055388 12055446
chr_1 g10800 g10800.t125 cds g10800.t125.CDS4 12055388 12055417
chr_1 g10800 g10800.t125 TSS g10800.t125 12055446 12055446
chr_1 g10800 g10800.t125 TTS g10800.t125 NA NA

Sequences

>g10800.t125 Gene=g10800 Length=594
AGTCGTATTAATTGTAAAGAGCAGCGAAAATGAGTTCAGCAGCCTACTATCCATTCCAAT
GCAAACCAACCGTTTACCCTGCCGATCCTTTTGACCCAAATGAAGATGCAGGTATCTTGA
GAAAGGCAATGAAAGGATTTGGAACTGATGAAAAGGCAATTATTGAAGTGCTTGCTCGTC
GTGGAATTGTTCAACGTCTTGAGATTGCTTCGGCATATAAGACCAACTTTGGCAAGGATT
TGATTAATGATTTGAAAAGTGAACTTGGTGGCAAGTTTGAAGATGTCATTCTTGCTTTGA
TGACTCCTTTGCCGCAATTCTATGCAAAGGAATTGCATGATGCAATTTCCGGCATTGGAA
CTGACGAAGACGCTATCATCGAAATTCTCTGCACACTCTCCAACTATGGCATTCGTACAA
TTGCAGAATTCTACGAACAACTGTATGGAAATTCACTCGAAAGCGACTTGAAGGGAGACA
CCTCAGGATTCTTTAAGCGTTTATGCGTATCATTAGTGCAAGGCAATCGCGATGAAAACA
ATGGTGTTGATCAAGGTTCTGCTCTTGCTGATGCTACTGCACTTTATGAAGCCG

>g10800.t125 Gene=g10800 Length=188
MSSAAYYPFQCKPTVYPADPFDPNEDAGILRKAMKGFGTDEKAIIEVLARRGIVQRLEIA
SAYKTNFGKDLINDLKSELGGKFEDVILALMTPLPQFYAKELHDAISGIGTDEDAIIEIL
CTLSNYGIRTIAEFYEQLYGNSLESDLKGDTSGFFKRLCVSLVQGNRDENNGVDQGSALA
DATALYEA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g10800.t125 Gene3D G3DSA:1.10.220.10 - 20 92 4.7E-28
10 g10800.t125 Gene3D G3DSA:1.10.220.10 - 94 166 2.4E-26
3 g10800.t125 PANTHER PTHR10502 ANNEXIN 7 188 2.7E-71
4 g10800.t125 PANTHER PTHR10502:SF212 ANNEXIN B9 7 188 2.7E-71
8 g10800.t125 PRINTS PR00196 Annexin family signature 35 57 3.3E-26
5 g10800.t125 PRINTS PR00196 Annexin family signature 75 91 3.3E-26
6 g10800.t125 PRINTS PR00196 Annexin family signature 102 123 3.3E-26
7 g10800.t125 PRINTS PR00196 Annexin family signature 185 188 3.3E-26
2 g10800.t125 Pfam PF00191 Annexin 26 90 8.2E-23
1 g10800.t125 Pfam PF00191 Annexin 98 162 8.9E-23
12 g10800.t125 ProSitePatterns PS00223 Annexin repeat signature. 38 90 -
16 g10800.t125 ProSiteProfiles PS51897 Annexin repeat profile. 21 92 26.995
15 g10800.t125 ProSiteProfiles PS51897 Annexin repeat profile. 93 164 27.041
14 g10800.t125 SMART SM00335 annex3 38 90 4.1E-22
13 g10800.t125 SMART SM00335 annex3 110 162 3.3E-21
9 g10800.t125 SUPERFAMILY SSF47874 Annexin 6 188 5.5E-66

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed