Gene loci information

Transcript annotation

  • This transcript has been annotated as Annexin B9.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10800 g10800.t15 TTS g10800.t15 12050020 12050020
chr_1 g10800 g10800.t15 isoform g10800.t15 12050198 12053662
chr_1 g10800 g10800.t15 exon g10800.t15.exon1 12050198 12050251
chr_1 g10800 g10800.t15 cds g10800.t15.CDS1 12050198 12050251
chr_1 g10800 g10800.t15 exon g10800.t15.exon2 12052686 12052867
chr_1 g10800 g10800.t15 cds g10800.t15.CDS2 12052686 12052867
chr_1 g10800 g10800.t15 exon g10800.t15.exon3 12052960 12053108
chr_1 g10800 g10800.t15 cds g10800.t15.CDS3 12052960 12053108
chr_1 g10800 g10800.t15 exon g10800.t15.exon4 12053171 12053303
chr_1 g10800 g10800.t15 cds g10800.t15.CDS4 12053171 12053303
chr_1 g10800 g10800.t15 exon g10800.t15.exon5 12053380 12053496
chr_1 g10800 g10800.t15 cds g10800.t15.CDS5 12053380 12053496
chr_1 g10800 g10800.t15 exon g10800.t15.exon6 12053568 12053662
chr_1 g10800 g10800.t15 cds g10800.t15.CDS6 12053568 12053592
chr_1 g10800 g10800.t15 TSS g10800.t15 12054437 12054437

Sequences

>g10800.t15 Gene=g10800 Length=730
GGTGGCAAGTTTGAAGATGTCATTCTTGCTTTGATGACTCCTTTGCCGCAATTCTATGCA
AAGGAATTGCATGATGCAATTTCCGGCATTGGTAAACGCTATCATCGAAATTCTCTGCAC
ACTCTCCAACTATGGCATTCGTACAATTGCAGAATTCTACGAACAACTGTATGGAAATTC
ACTCGAAAGCGACTTGAAGGGAGACACCTCAGGATTCTTTAAGCGTTTATGCGTATCATT
AGTGCAAGGCAATCGCGATGAAAACAATGGTGTTGATCAAGGTTCTGCTCTTGCTGATGC
TACTGCACTTTATGAAGCCGGTGAAGGACAATGGGGCACTGATGAGTCAGTTTTCAATCA
AATTCTTGTAACCAGATCATACCAACAATTGAGACAAGTCTTTTTGGAATATGAGGCTAT
GAGCGGCCACGACATTGAAAAAGCTATCAAGCGTGAATTCTCAGGAAACGCTGAAAAAGG
ATTCCTCGCAATCGCCAAGGTTGTCAAATCAAAGGTTGATTTCTTTGCTGAAAAACTCTA
CGAGAGCATGAAGGGCTTAGGTACGAATGACAAGACATTGATTCGTATCATTGTTTCACG
CTCAGAAATTGATTTGGGTGACATCAAAGAAGCATTTGAAGCCAAGTATGGAAAAAGCCT
CGAGAGCTGGGTTAAGGATGAACTATCGAGTGATTATGAGCGAGTTATGGTTTGCCTTCT
TGGATCTTAA

>g10800.t15 Gene=g10800 Length=219
MMQFPALVNAIIEILCTLSNYGIRTIAEFYEQLYGNSLESDLKGDTSGFFKRLCVSLVQG
NRDENNGVDQGSALADATALYEAGEGQWGTDESVFNQILVTRSYQQLRQVFLEYEAMSGH
DIEKAIKREFSGNAEKGFLAIAKVVKSKVDFFAEKLYESMKGLGTNDKTLIRIIVSRSEI
DLGDIKEAFEAKYGKSLESWVKDELSSDYERVMVCLLGS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g10800.t15 Gene3D G3DSA:1.10.220.10 - 8 61 3.1E-16
11 g10800.t15 Gene3D G3DSA:1.10.220.10 - 62 147 1.3E-30
9 g10800.t15 Gene3D G3DSA:1.10.220.10 - 149 219 2.5E-26
4 g10800.t15 PANTHER PTHR10502 ANNEXIN 9 217 4.1E-91
5 g10800.t15 PANTHER PTHR10502:SF212 ANNEXIN B9 9 217 4.1E-91
7 g10800.t15 PRINTS PR00196 Annexin family signature 86 108 2.5E-8
6 g10800.t15 PRINTS PR00196 Annexin family signature 156 177 2.5E-8
1 g10800.t15 Pfam PF00191 Annexin 9 57 1.7E-14
3 g10800.t15 Pfam PF00191 Annexin 76 141 8.2E-24
2 g10800.t15 Pfam PF00191 Annexin 151 216 2.5E-23
12 g10800.t15 ProSitePatterns PS00223 Annexin repeat signature. 164 216 -
16 g10800.t15 ProSiteProfiles PS51897 Annexin repeat profile. 1 59 15.479
18 g10800.t15 ProSiteProfiles PS51897 Annexin repeat profile. 71 143 27.356
17 g10800.t15 ProSiteProfiles PS51897 Annexin repeat profile. 147 218 27.946
15 g10800.t15 SMART SM00335 annex3 8 57 9.4E-14
14 g10800.t15 SMART SM00335 annex3 89 141 5.4E-20
13 g10800.t15 SMART SM00335 annex3 164 216 6.2E-23
8 g10800.t15 SUPERFAMILY SSF47874 Annexin 9 218 3.8E-78

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed