General information for g10800.t16
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Annexin B9.
Parent gene
- The parent gene g10800 is located on chr_1: 12053250..12057223 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10800 | g10800.t16 | TTS | g10800.t16 | 12050020 | 12050020 |
| chr_1 | g10800 | g10800.t16 | isoform | g10800.t16 | 12050198 | 12053866 |
| chr_1 | g10800 | g10800.t16 | exon | g10800.t16.exon1 | 12050198 | 12050251 |
| chr_1 | g10800 | g10800.t16 | exon | g10800.t16.exon2 | 12052686 | 12052867 |
| chr_1 | g10800 | g10800.t16 | exon | g10800.t16.exon3 | 12052960 | 12053103 |
| chr_1 | g10800 | g10800.t16 | cds | g10800.t16.CDS1 | 12053040 | 12053103 |
| chr_1 | g10800 | g10800.t16 | exon | g10800.t16.exon4 | 12053171 | 12053303 |
| chr_1 | g10800 | g10800.t16 | cds | g10800.t16.CDS2 | 12053171 | 12053303 |
| chr_1 | g10800 | g10800.t16 | exon | g10800.t16.exon5 | 12053380 | 12053508 |
| chr_1 | g10800 | g10800.t16 | cds | g10800.t16.CDS3 | 12053380 | 12053508 |
| chr_1 | g10800 | g10800.t16 | exon | g10800.t16.exon6 | 12053572 | 12053866 |
| chr_1 | g10800 | g10800.t16 | cds | g10800.t16.CDS4 | 12053572 | 12053800 |
| chr_1 | g10800 | g10800.t16 | TSS | g10800.t16 | 12054437 | 12054437 |
Sequences
>g10800.t16 Gene=g10800 Length=937
AAACCAACCGTTTACCCTGCCGATCCTTTTGACCCAAATGAAGATGCAGGTATCTTGAGA
AAGGCAATGAAAGGATTTGGAACTGATGAAAAGGCAATTATTGAAGTGCTTGCTCGTCGT
GGAATTGTTCAACGTCTTGAGATTGCTTCGGCATATAAGACCAACTTTGGCAAGGATTTG
ATTAATGATTTGAAAAGTGAACTTGGTGGCAAGTTTGAAGATGTCATTCTTGCTTTGATG
ACTCCTTTGCCGCAATTCTATGCAAAGGAATTGCATGATGCAATTTCCGGCATTGGAACT
GACGAAGACGCTATCATCGAAATTCTCTGCACACTCTCCAACTATGGCATTCGTACAATT
GCAGAATTCTACGAACAACTGTATGGAAATTCACTCGAAAGCGACTTGAAGGGAGACACC
TCAGGATTCTTTAAGCGTTTATGCGTATCATTAGTGCAAGGCAATCGCGATGAAAACAAT
GGTGTTGATCAAGGTTCTGCTCTTGCTGATGCTACTGCACTTTATGAAGCCGGTGAAGGA
CAATGGGGCACTGATGATTTTCAATCAAATTCTTGTAACCAGATCATACCAACAATTGAG
ACAAGTCTTTTTGGAATATGAGGCTATGAGCGGCCACGACATTGAAAAAGCTATCAAGCG
TGAATTCTCAGGAAACGCTGAAAAAGGATTCCTCGCAATCGCCAAGGTTGTCAAATCAAA
GGTTGATTTCTTTGCTGAAAAACTCTACGAGAGCATGAAGGGCTTAGGTACGAATGACAA
GACATTGATTCGTATCATTGTTTCACGCTCAGAAATTGATTTGGGTGACATCAAAGAAGC
ATTTGAAGCCAAGTATGGAAAAAGCCTCGAGAGCTGGGTTAAGGATGAACTATCGAGTGA
TTATGAGCGAGTTATGGTTTGCCTTCTTGGATCTTAA
>g10800.t16 Gene=g10800 Length=184
MKGFGTDEKAIIEVLARRGIVQRLEIASAYKTNFGKDLINDLKSELGGKFEDVILALMTP
LPQFYAKELHDAISGIGTDEDAIIEILCTLSNYGIRTIAEFYEQLYGNSLESDLKGDTSG
FFKRLCVSLVQGNRDENNGVDQGSALADATALYEAGEGQWGTDDFQSNSCNQIIPTIETS
LFGI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g10800.t16 | Gene3D | G3DSA:1.10.220.10 | - | 1 | 59 | 9.2E-22 |
| 12 | g10800.t16 | Gene3D | G3DSA:1.10.220.10 | - | 61 | 132 | 2.3E-26 |
| 11 | g10800.t16 | Gene3D | G3DSA:1.10.220.10 | - | 133 | 170 | 8.1E-6 |
| 3 | g10800.t16 | PANTHER | PTHR10502 | ANNEXIN | 1 | 166 | 4.9E-65 |
| 4 | g10800.t16 | PANTHER | PTHR10502:SF212 | ANNEXIN B9 | 1 | 166 | 4.9E-65 |
| 7 | g10800.t16 | PRINTS | PR00196 | Annexin family signature | 2 | 24 | 1.7E-28 |
| 6 | g10800.t16 | PRINTS | PR00196 | Annexin family signature | 42 | 58 | 1.7E-28 |
| 8 | g10800.t16 | PRINTS | PR00196 | Annexin family signature | 69 | 90 | 1.7E-28 |
| 5 | g10800.t16 | PRINTS | PR00196 | Annexin family signature | 152 | 178 | 1.7E-28 |
| 2 | g10800.t16 | Pfam | PF00191 | Annexin | 1 | 57 | 8.7E-19 |
| 1 | g10800.t16 | Pfam | PF00191 | Annexin | 65 | 129 | 8.5E-23 |
| 13 | g10800.t16 | ProSitePatterns | PS00223 | Annexin repeat signature. | 5 | 57 | - |
| 17 | g10800.t16 | ProSiteProfiles | PS51897 | Annexin repeat profile. | 1 | 59 | 23.568 |
| 16 | g10800.t16 | ProSiteProfiles | PS51897 | Annexin repeat profile. | 60 | 131 | 27.041 |
| 14 | g10800.t16 | SMART | SM00335 | annex3 | 5 | 57 | 4.1E-22 |
| 15 | g10800.t16 | SMART | SM00335 | annex3 | 77 | 129 | 3.3E-21 |
| 9 | g10800.t16 | SUPERFAMILY | SSF47874 | Annexin | 1 | 165 | 1.05E-60 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005544 | calcium-dependent phospholipid binding | MF |
| GO:0005509 | calcium ion binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed