Gene loci information

Transcript annotation

  • This transcript has been annotated as Annexin B9.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10800 g10800.t17 TTS g10800.t17 12050020 12050020
chr_1 g10800 g10800.t17 isoform g10800.t17 12050198 12054207
chr_1 g10800 g10800.t17 exon g10800.t17.exon1 12050198 12050251
chr_1 g10800 g10800.t17 cds g10800.t17.CDS1 12050198 12050251
chr_1 g10800 g10800.t17 exon g10800.t17.exon2 12052686 12052867
chr_1 g10800 g10800.t17 cds g10800.t17.CDS2 12052686 12052867
chr_1 g10800 g10800.t17 exon g10800.t17.exon3 12052960 12053108
chr_1 g10800 g10800.t17 cds g10800.t17.CDS3 12052960 12053108
chr_1 g10800 g10800.t17 exon g10800.t17.exon4 12053171 12053303
chr_1 g10800 g10800.t17 cds g10800.t17.CDS4 12053171 12053303
chr_1 g10800 g10800.t17 exon g10800.t17.exon5 12053380 12053508
chr_1 g10800 g10800.t17 cds g10800.t17.CDS5 12053380 12053508
chr_1 g10800 g10800.t17 exon g10800.t17.exon6 12053572 12054207
chr_1 g10800 g10800.t17 cds g10800.t17.CDS6 12053572 12053800
chr_1 g10800 g10800.t17 TSS g10800.t17 12054437 12054437

Sequences

>g10800.t17 Gene=g10800 Length=1283
ATGAGTAAAAGAACGGTAAAAATTATTAATGTCATCAATCAATTATTTAATAAAGGGAAC
ATAATTAATGCTTTTATAATAAATATTCTTTTTCTTTACTTCCTTTATTCATAACAAAAG
CATAAAGTCCTTGAGACTTATTTTTGGTTAGCTTTAGTAAGGCAGAGCAGGATTCAATTT
CTATATAAACATAATGTAGTTTGTTAGGAGTAGGCGAGTGTATACATGACGATAATCAAA
ATGAAAATCGATTTTCTTCTACATGTGTCACGCAAATGATAATAAACTAAATCAAAATAA
AAAATATTAACTTAAATTATCTCTTATTCTCTGTTTAGTGCAAACCAACCGTTTACCCTG
CCGATCCTTTTGACCCAAATGAAGATGCAGGTATCTTGAGAAAGGCAATGAAAGGATTTG
GAACTGATGAAAAGGCAATTATTGAAGTGCTTGCTCGTCGTGGAATTGTTCAACGTCTTG
AGATTGCTTCGGCATATAAGACCAACTTTGGCAAGGATTTGATTAATGATTTGAAAAGTG
AACTTGGTGGCAAGTTTGAAGATGTCATTCTTGCTTTGATGACTCCTTTGCCGCAATTCT
ATGCAAAGGAATTGCATGATGCAATTTCCGGCATTGGAACTGACGAAGACGCTATCATCG
AAATTCTCTGCACACTCTCCAACTATGGCATTCGTACAATTGCAGAATTCTACGAACAAC
TGTATGGAAATTCACTCGAAAGCGACTTGAAGGGAGACACCTCAGGATTCTTTAAGCGTT
TATGCGTATCATTAGTGCAAGGCAATCGCGATGAAAACAATGGTGTTGATCAAGGTTCTG
CTCTTGCTGATGCTACTGCACTTTATGAAGCCGGTGAAGGACAATGGGGCACTGATGAGT
CAGTTTTCAATCAAATTCTTGTAACCAGATCATACCAACAATTGAGACAAGTCTTTTTGG
AATATGAGGCTATGAGCGGCCACGACATTGAAAAAGCTATCAAGCGTGAATTCTCAGGAA
ACGCTGAAAAAGGATTCCTCGCAATCGCCAAGGTTGTCAAATCAAAGGTTGATTTCTTTG
CTGAAAAACTCTACGAGAGCATGAAGGGCTTAGGTACGAATGACAAGACATTGATTCGTA
TCATTGTTTCACGCTCAGAAATTGATTTGGGTGACATCAAAGAAGCATTTGAAGCCAAGT
ATGGAAAAAGCCTCGAGAGCTGGGTTAAGGATGAACTATCGAGTGATTATGAGCGAGTTA
TGGTTTGCCTTCTTGGATCTTAA

>g10800.t17 Gene=g10800 Length=291
MKGFGTDEKAIIEVLARRGIVQRLEIASAYKTNFGKDLINDLKSELGGKFEDVILALMTP
LPQFYAKELHDAISGIGTDEDAIIEILCTLSNYGIRTIAEFYEQLYGNSLESDLKGDTSG
FFKRLCVSLVQGNRDENNGVDQGSALADATALYEAGEGQWGTDESVFNQILVTRSYQQLR
QVFLEYEAMSGHDIEKAIKREFSGNAEKGFLAIAKVVKSKVDFFAEKLYESMKGLGTNDK
TLIRIIVSRSEIDLGDIKEAFEAKYGKSLESWVKDELSSDYERVMVCLLGS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g10800.t17 Gene3D G3DSA:1.10.220.10 - 1 59 2.1E-21
16 g10800.t17 Gene3D G3DSA:1.10.220.10 - 61 132 5.7E-26
15 g10800.t17 Gene3D G3DSA:1.10.220.10 - 133 219 2.3E-30
17 g10800.t17 Gene3D G3DSA:1.10.220.10 - 221 291 4.3E-26
5 g10800.t17 PANTHER PTHR10502 ANNEXIN 1 289 7.6E-130
6 g10800.t17 PANTHER PTHR10502:SF212 ANNEXIN B9 1 289 7.6E-130
11 g10800.t17 PRINTS PR00196 Annexin family signature 2 24 1.8E-56
10 g10800.t17 PRINTS PR00196 Annexin family signature 42 58 1.8E-56
12 g10800.t17 PRINTS PR00196 Annexin family signature 69 90 1.8E-56
8 g10800.t17 PRINTS PR00196 Annexin family signature 152 178 1.8E-56
9 g10800.t17 PRINTS PR00196 Annexin family signature 232 252 1.8E-56
7 g10800.t17 PRINTS PR00196 Annexin family signature 260 275 1.8E-56
4 g10800.t17 Pfam PF00191 Annexin 1 57 2.0E-18
1 g10800.t17 Pfam PF00191 Annexin 65 129 2.0E-22
3 g10800.t17 Pfam PF00191 Annexin 148 213 1.4E-23
2 g10800.t17 Pfam PF00191 Annexin 223 288 4.2E-23
18 g10800.t17 ProSitePatterns PS00223 Annexin repeat signature. 5 57 -
19 g10800.t17 ProSitePatterns PS00223 Annexin repeat signature. 236 288 -
25 g10800.t17 ProSiteProfiles PS51897 Annexin repeat profile. 1 59 23.568
24 g10800.t17 ProSiteProfiles PS51897 Annexin repeat profile. 60 131 27.041
27 g10800.t17 ProSiteProfiles PS51897 Annexin repeat profile. 143 215 27.356
26 g10800.t17 ProSiteProfiles PS51897 Annexin repeat profile. 219 290 27.946
20 g10800.t17 SMART SM00335 annex3 5 57 4.1E-22
22 g10800.t17 SMART SM00335 annex3 77 129 3.3E-21
21 g10800.t17 SMART SM00335 annex3 161 213 5.4E-20
23 g10800.t17 SMART SM00335 annex3 236 288 6.2E-23
13 g10800.t17 SUPERFAMILY SSF47874 Annexin 1 290 1.57E-111

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values