Gene loci information

Transcript annotation

  • This transcript has been annotated as Annexin B9.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10800 g10800.t18 TTS g10800.t18 12050020 12050020
chr_1 g10800 g10800.t18 isoform g10800.t18 12050198 12054207
chr_1 g10800 g10800.t18 exon g10800.t18.exon1 12050198 12050251
chr_1 g10800 g10800.t18 cds g10800.t18.CDS1 12050198 12050251
chr_1 g10800 g10800.t18 exon g10800.t18.exon2 12052686 12052867
chr_1 g10800 g10800.t18 cds g10800.t18.CDS2 12052686 12052867
chr_1 g10800 g10800.t18 exon g10800.t18.exon3 12052960 12053108
chr_1 g10800 g10800.t18 cds g10800.t18.CDS3 12052960 12053108
chr_1 g10800 g10800.t18 exon g10800.t18.exon4 12053171 12053303
chr_1 g10800 g10800.t18 cds g10800.t18.CDS4 12053171 12053303
chr_1 g10800 g10800.t18 exon g10800.t18.exon5 12053380 12053508
chr_1 g10800 g10800.t18 cds g10800.t18.CDS5 12053380 12053508
chr_1 g10800 g10800.t18 exon g10800.t18.exon6 12053572 12053869
chr_1 g10800 g10800.t18 cds g10800.t18.CDS6 12053572 12053869
chr_1 g10800 g10800.t18 exon g10800.t18.exon7 12054193 12054207
chr_1 g10800 g10800.t18 cds g10800.t18.CDS7 12054193 12054207
chr_1 g10800 g10800.t18 TSS g10800.t18 12054437 12054437

Sequences

>g10800.t18 Gene=g10800 Length=960
ATGAGTAAAAGAACGTGCAAACCAACCGTTTACCCTGCCGATCCTTTTGACCCAAATGAA
GATGCAGGTATCTTGAGAAAGGCAATGAAAGGATTTGGAACTGATGAAAAGGCAATTATT
GAAGTGCTTGCTCGTCGTGGAATTGTTCAACGTCTTGAGATTGCTTCGGCATATAAGACC
AACTTTGGCAAGGATTTGATTAATGATTTGAAAAGTGAACTTGGTGGCAAGTTTGAAGAT
GTCATTCTTGCTTTGATGACTCCTTTGCCGCAATTCTATGCAAAGGAATTGCATGATGCA
ATTTCCGGCATTGGAACTGACGAAGACGCTATCATCGAAATTCTCTGCACACTCTCCAAC
TATGGCATTCGTACAATTGCAGAATTCTACGAACAACTGTATGGAAATTCACTCGAAAGC
GACTTGAAGGGAGACACCTCAGGATTCTTTAAGCGTTTATGCGTATCATTAGTGCAAGGC
AATCGCGATGAAAACAATGGTGTTGATCAAGGTTCTGCTCTTGCTGATGCTACTGCACTT
TATGAAGCCGGTGAAGGACAATGGGGCACTGATGAGTCAGTTTTCAATCAAATTCTTGTA
ACCAGATCATACCAACAATTGAGACAAGTCTTTTTGGAATATGAGGCTATGAGCGGCCAC
GACATTGAAAAAGCTATCAAGCGTGAATTCTCAGGAAACGCTGAAAAAGGATTCCTCGCA
ATCGCCAAGGTTGTCAAATCAAAGGTTGATTTCTTTGCTGAAAAACTCTACGAGAGCATG
AAGGGCTTAGGTACGAATGACAAGACATTGATTCGTATCATTGTTTCACGCTCAGAAATT
GATTTGGGTGACATCAAAGAAGCATTTGAAGCCAAGTATGGAAAAAGCCTCGAGAGCTGG
GTTAAGGATGAACTATCGAGTGATTATGAGCGAGTTATGGTTTGCCTTCTTGGATCTTAA

>g10800.t18 Gene=g10800 Length=319
MSKRTCKPTVYPADPFDPNEDAGILRKAMKGFGTDEKAIIEVLARRGIVQRLEIASAYKT
NFGKDLINDLKSELGGKFEDVILALMTPLPQFYAKELHDAISGIGTDEDAIIEILCTLSN
YGIRTIAEFYEQLYGNSLESDLKGDTSGFFKRLCVSLVQGNRDENNGVDQGSALADATAL
YEAGEGQWGTDESVFNQILVTRSYQQLRQVFLEYEAMSGHDIEKAIKREFSGNAEKGFLA
IAKVVKSKVDFFAEKLYESMKGLGTNDKTLIRIIVSRSEIDLGDIKEAFEAKYGKSLESW
VKDELSSDYERVMVCLLGS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
17 g10800.t18 Gene3D G3DSA:1.10.220.10 - 15 87 1.3E-27
16 g10800.t18 Gene3D G3DSA:1.10.220.10 - 89 160 6.7E-26
15 g10800.t18 Gene3D G3DSA:1.10.220.10 - 161 247 2.8E-30
14 g10800.t18 Gene3D G3DSA:1.10.220.10 - 249 319 5.0E-26
5 g10800.t18 PANTHER PTHR10502 ANNEXIN 4 317 1.3E-141
6 g10800.t18 PANTHER PTHR10502:SF212 ANNEXIN B9 4 317 1.3E-141
12 g10800.t18 PRINTS PR00196 Annexin family signature 30 52 2.9E-56
7 g10800.t18 PRINTS PR00196 Annexin family signature 70 86 2.9E-56
8 g10800.t18 PRINTS PR00196 Annexin family signature 97 118 2.9E-56
11 g10800.t18 PRINTS PR00196 Annexin family signature 180 206 2.9E-56
9 g10800.t18 PRINTS PR00196 Annexin family signature 260 280 2.9E-56
10 g10800.t18 PRINTS PR00196 Annexin family signature 288 303 2.9E-56
4 g10800.t18 Pfam PF00191 Annexin 21 85 2.2E-22
2 g10800.t18 Pfam PF00191 Annexin 93 157 2.4E-22
1 g10800.t18 Pfam PF00191 Annexin 176 241 1.6E-23
3 g10800.t18 Pfam PF00191 Annexin 251 316 4.9E-23
18 g10800.t18 ProSitePatterns PS00223 Annexin repeat signature. 33 85 -
19 g10800.t18 ProSitePatterns PS00223 Annexin repeat signature. 264 316 -
26 g10800.t18 ProSiteProfiles PS51897 Annexin repeat profile. 16 87 26.995
25 g10800.t18 ProSiteProfiles PS51897 Annexin repeat profile. 88 159 27.041
27 g10800.t18 ProSiteProfiles PS51897 Annexin repeat profile. 171 243 27.356
24 g10800.t18 ProSiteProfiles PS51897 Annexin repeat profile. 247 318 27.946
20 g10800.t18 SMART SM00335 annex3 33 85 4.1E-22
23 g10800.t18 SMART SM00335 annex3 105 157 3.3E-21
22 g10800.t18 SMART SM00335 annex3 189 241 5.4E-20
21 g10800.t18 SMART SM00335 annex3 264 316 6.2E-23
13 g10800.t18 SUPERFAMILY SSF47874 Annexin 6 318 9.03E-120

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values