Gene loci information

Transcript annotation

  • This transcript has been annotated as Annexin B9.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10800 g10800.t19 TTS g10800.t19 12050020 12050020
chr_1 g10800 g10800.t19 isoform g10800.t19 12050198 12054207
chr_1 g10800 g10800.t19 exon g10800.t19.exon1 12050198 12050251
chr_1 g10800 g10800.t19 cds g10800.t19.CDS1 12050198 12050251
chr_1 g10800 g10800.t19 exon g10800.t19.exon2 12052686 12052867
chr_1 g10800 g10800.t19 cds g10800.t19.CDS2 12052686 12052867
chr_1 g10800 g10800.t19 exon g10800.t19.exon3 12052960 12053108
chr_1 g10800 g10800.t19 cds g10800.t19.CDS3 12052960 12053108
chr_1 g10800 g10800.t19 exon g10800.t19.exon4 12053171 12053303
chr_1 g10800 g10800.t19 cds g10800.t19.CDS4 12053171 12053303
chr_1 g10800 g10800.t19 exon g10800.t19.exon5 12053380 12053512
chr_1 g10800 g10800.t19 cds g10800.t19.CDS5 12053380 12053512
chr_1 g10800 g10800.t19 exon g10800.t19.exon6 12053572 12054207
chr_1 g10800 g10800.t19 cds g10800.t19.CDS6 12053572 12053592
chr_1 g10800 g10800.t19 TSS g10800.t19 12054437 12054437

Sequences

>g10800.t19 Gene=g10800 Length=1287
ATGAGTAAAAGAACGGTAAAAATTATTAATGTCATCAATCAATTATTTAATAAAGGGAAC
ATAATTAATGCTTTTATAATAAATATTCTTTTTCTTTACTTCCTTTATTCATAACAAAAG
CATAAAGTCCTTGAGACTTATTTTTGGTTAGCTTTAGTAAGGCAGAGCAGGATTCAATTT
CTATATAAACATAATGTAGTTTGTTAGGAGTAGGCGAGTGTATACATGACGATAATCAAA
ATGAAAATCGATTTTCTTCTACATGTGTCACGCAAATGATAATAAACTAAATCAAAATAA
AAAATATTAACTTAAATTATCTCTTATTCTCTGTTTAGTGCAAACCAACCGTTTACCCTG
CCGATCCTTTTGACCCAAATGAAGATGCAGGTATCTTGAGAAAGGCAATGAAAGGATTTG
GAACTGATGAAAAGGCAATTATTGAAGTGCTTGCTCGTCGTGGAATTGTTCAACGTCTTG
AGATTGCTTCGGCATATAAGACCAACTTTGGCAAGGATTTGATTAATGATTTGAAAAGTG
AACTTGGTGGCAAGTTTGAAGATGTCATTCTTGCTTTGATGACTCCTTTGCCGCAATTCT
ATGCAAAGGAATTGCATGATGCAATTTCCGGCATTGAAAGGAACTGACGAAGACGCTATC
ATCGAAATTCTCTGCACACTCTCCAACTATGGCATTCGTACAATTGCAGAATTCTACGAA
CAACTGTATGGAAATTCACTCGAAAGCGACTTGAAGGGAGACACCTCAGGATTCTTTAAG
CGTTTATGCGTATCATTAGTGCAAGGCAATCGCGATGAAAACAATGGTGTTGATCAAGGT
TCTGCTCTTGCTGATGCTACTGCACTTTATGAAGCCGGTGAAGGACAATGGGGCACTGAT
GAGTCAGTTTTCAATCAAATTCTTGTAACCAGATCATACCAACAATTGAGACAAGTCTTT
TTGGAATATGAGGCTATGAGCGGCCACGACATTGAAAAAGCTATCAAGCGTGAATTCTCA
GGAAACGCTGAAAAAGGATTCCTCGCAATCGCCAAGGTTGTCAAATCAAAGGTTGATTTC
TTTGCTGAAAAACTCTACGAGAGCATGAAGGGCTTAGGTACGAATGACAAGACATTGATT
CGTATCATTGTTTCACGCTCAGAAATTGATTTGGGTGACATCAAAGAAGCATTTGAAGCC
AAGTATGGAAAAAGCCTCGAGAGCTGGGTTAAGGATGAACTATCGAGTGATTATGAGCGA
GTTATGGTTTGCCTTCTTGGATCTTAA

>g10800.t19 Gene=g10800 Length=223
MMQFPALKGTDEDAIIEILCTLSNYGIRTIAEFYEQLYGNSLESDLKGDTSGFFKRLCVS
LVQGNRDENNGVDQGSALADATALYEAGEGQWGTDESVFNQILVTRSYQQLRQVFLEYEA
MSGHDIEKAIKREFSGNAEKGFLAIAKVVKSKVDFFAEKLYESMKGLGTNDKTLIRIIVS
RSEIDLGDIKEAFEAKYGKSLESWVKDELSSDYERVMVCLLGS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g10800.t19 Gene3D G3DSA:1.10.220.10 - 5 64 1.1E-19
12 g10800.t19 Gene3D G3DSA:1.10.220.10 - 65 151 1.3E-30
11 g10800.t19 Gene3D G3DSA:1.10.220.10 - 153 223 2.6E-26
4 g10800.t19 PANTHER PTHR10502 ANNEXIN 8 221 3.1E-92
5 g10800.t19 PANTHER PTHR10502:SF212 ANNEXIN B9 8 221 3.1E-92
8 g10800.t19 PRINTS PR00196 Annexin family signature 1 21 4.4E-33
7 g10800.t19 PRINTS PR00196 Annexin family signature 84 110 4.4E-33
6 g10800.t19 PRINTS PR00196 Annexin family signature 164 184 4.4E-33
9 g10800.t19 PRINTS PR00196 Annexin family signature 192 207 4.4E-33
2 g10800.t19 Pfam PF00191 Annexin 8 61 4.1E-18
3 g10800.t19 Pfam PF00191 Annexin 80 145 8.5E-24
1 g10800.t19 Pfam PF00191 Annexin 155 220 2.6E-23
14 g10800.t19 ProSitePatterns PS00223 Annexin repeat signature. 168 220 -
19 g10800.t19 ProSiteProfiles PS51897 Annexin repeat profile. 1 63 21.743
18 g10800.t19 ProSiteProfiles PS51897 Annexin repeat profile. 75 147 27.356
20 g10800.t19 ProSiteProfiles PS51897 Annexin repeat profile. 151 222 27.946
16 g10800.t19 SMART SM00335 annex3 9 61 3.3E-21
15 g10800.t19 SMART SM00335 annex3 93 145 5.4E-20
17 g10800.t19 SMART SM00335 annex3 168 220 6.2E-23
10 g10800.t19 SUPERFAMILY SSF47874 Annexin 8 222 1.03E-80

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values