Gene loci information

Transcript annotation

  • This transcript has been annotated as Annexin B9.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10800 g10800.t21 TTS g10800.t21 12050020 12050020
chr_1 g10800 g10800.t21 isoform g10800.t21 12050198 12054207
chr_1 g10800 g10800.t21 exon g10800.t21.exon1 12050198 12050710
chr_1 g10800 g10800.t21 cds g10800.t21.CDS1 12050657 12050710
chr_1 g10800 g10800.t21 exon g10800.t21.exon2 12052686 12052867
chr_1 g10800 g10800.t21 cds g10800.t21.CDS2 12052686 12052867
chr_1 g10800 g10800.t21 exon g10800.t21.exon3 12052960 12053108
chr_1 g10800 g10800.t21 cds g10800.t21.CDS3 12052960 12053108
chr_1 g10800 g10800.t21 exon g10800.t21.exon4 12053171 12053303
chr_1 g10800 g10800.t21 cds g10800.t21.CDS4 12053171 12053303
chr_1 g10800 g10800.t21 exon g10800.t21.exon5 12053380 12053508
chr_1 g10800 g10800.t21 cds g10800.t21.CDS5 12053380 12053508
chr_1 g10800 g10800.t21 exon g10800.t21.exon6 12053572 12054207
chr_1 g10800 g10800.t21 cds g10800.t21.CDS6 12053572 12053800
chr_1 g10800 g10800.t21 TSS g10800.t21 12054437 12054437

Sequences

>g10800.t21 Gene=g10800 Length=1742
ATGAGTAAAAGAACGGTAAAAATTATTAATGTCATCAATCAATTATTTAATAAAGGGAAC
ATAATTAATGCTTTTATAATAAATATTCTTTTTCTTTACTTCCTTTATTCATAACAAAAG
CATAAAGTCCTTGAGACTTATTTTTGGTTAGCTTTAGTAAGGCAGAGCAGGATTCAATTT
CTATATAAACATAATGTAGTTTGTTAGGAGTAGGCGAGTGTATACATGACGATAATCAAA
ATGAAAATCGATTTTCTTCTACATGTGTCACGCAAATGATAATAAACTAAATCAAAATAA
AAAATATTAACTTAAATTATCTCTTATTCTCTGTTTAGTGCAAACCAACCGTTTACCCTG
CCGATCCTTTTGACCCAAATGAAGATGCAGGTATCTTGAGAAAGGCAATGAAAGGATTTG
GAACTGATGAAAAGGCAATTATTGAAGTGCTTGCTCGTCGTGGAATTGTTCAACGTCTTG
AGATTGCTTCGGCATATAAGACCAACTTTGGCAAGGATTTGATTAATGATTTGAAAAGTG
AACTTGGTGGCAAGTTTGAAGATGTCATTCTTGCTTTGATGACTCCTTTGCCGCAATTCT
ATGCAAAGGAATTGCATGATGCAATTTCCGGCATTGGAACTGACGAAGACGCTATCATCG
AAATTCTCTGCACACTCTCCAACTATGGCATTCGTACAATTGCAGAATTCTACGAACAAC
TGTATGGAAATTCACTCGAAAGCGACTTGAAGGGAGACACCTCAGGATTCTTTAAGCGTT
TATGCGTATCATTAGTGCAAGGCAATCGCGATGAAAACAATGGTGTTGATCAAGGTTCTG
CTCTTGCTGATGCTACTGCACTTTATGAAGCCGGTGAAGGACAATGGGGCACTGATGAGT
CAGTTTTCAATCAAATTCTTGTAACCAGATCATACCAACAATTGAGACAAGTCTTTTTGG
AATATGAGGCTATGAGCGGCCACGACATTGAAAAAGCTATCAAGCGTGAATTCTCAGGAA
ACGCTGAAAAAGGATTCCTCGCAATCGCCAAGGTTGTCAAATCAAAGGTTGATTTCTTTG
CTGAAAAACTCTACGAGAGCATGAAGGGCTTAGGTACGAATGACAAGACATTGATTCGTA
TCATTGTTTCACGCTCAGAAATTGATTTGGGTGACATCAAAGAAGCATTTGAAGCCAAGT
ATGGAAAAAGCCTCGAGAGCTGGGTTAAGGAAGATTGTGGTGGCGATCTAGGTGAATTGT
TGGCCGAGCTGTGCGCATACTAAGACATCGATAAAATCAAAAAAAGCGTAATGCAATGCT
ATGCAGATAAAAATGTTCGATGTGTATCAATTTTGAATGACACATAAATTTTTACCAATA
ATTTTTGAATATTAATCTATGAATGTATTTTTATTAAGTTATTTTTTACCTTCATGTATT
CAATGCACATCTTTCCCTGTGAGTTGATAAATTTTTACATATGTAGAATTCTAAATAGAA
AGAAAGAGAATTGTGCTTTAACATAATATATACCTTTCTTAACTATCCTTGTATTGTGTG
TGTACTATTTCCTTTAATATCTGATAATGACATAAAAGATTTTTTGGGGAAATGTCATAA
AGTTATAAAATCCATACAACAATCATAATTTACTTAAAATTTAATTTTCAATAAATTCAA
TTTCACAGGATGAACTATCGAGTGATTATGAGCGAGTTATGGTTTGCCTTCTTGGATCTT
AA

>g10800.t21 Gene=g10800 Length=291
MKGFGTDEKAIIEVLARRGIVQRLEIASAYKTNFGKDLINDLKSELGGKFEDVILALMTP
LPQFYAKELHDAISGIGTDEDAIIEILCTLSNYGIRTIAEFYEQLYGNSLESDLKGDTSG
FFKRLCVSLVQGNRDENNGVDQGSALADATALYEAGEGQWGTDESVFNQILVTRSYQQLR
QVFLEYEAMSGHDIEKAIKREFSGNAEKGFLAIAKVVKSKVDFFAEKLYESMKGLGTNDK
TLIRIIVSRSEIDLGDIKEAFEAKYGKSLESWVKEDCGGDLGELLAELCAY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g10800.t21 Gene3D G3DSA:1.10.220.10 - 1 59 2.1E-21
17 g10800.t21 Gene3D G3DSA:1.10.220.10 - 61 132 5.7E-26
16 g10800.t21 Gene3D G3DSA:1.10.220.10 - 133 219 2.3E-30
14 g10800.t21 Gene3D G3DSA:1.10.220.10 - 221 290 1.3E-24
5 g10800.t21 PANTHER PTHR10502 ANNEXIN 1 288 2.1E-129
6 g10800.t21 PANTHER PTHR10502:SF212 ANNEXIN B9 1 288 2.1E-129
11 g10800.t21 PRINTS PR00196 Annexin family signature 2 24 7.0E-55
10 g10800.t21 PRINTS PR00196 Annexin family signature 42 58 7.0E-55
12 g10800.t21 PRINTS PR00196 Annexin family signature 69 90 7.0E-55
8 g10800.t21 PRINTS PR00196 Annexin family signature 152 178 7.0E-55
9 g10800.t21 PRINTS PR00196 Annexin family signature 232 252 7.0E-55
7 g10800.t21 PRINTS PR00196 Annexin family signature 276 289 7.0E-55
4 g10800.t21 Pfam PF00191 Annexin 1 57 2.0E-18
2 g10800.t21 Pfam PF00191 Annexin 65 129 2.0E-22
3 g10800.t21 Pfam PF00191 Annexin 148 213 1.4E-23
1 g10800.t21 Pfam PF00191 Annexin 223 286 1.9E-21
18 g10800.t21 ProSitePatterns PS00223 Annexin repeat signature. 5 57 -
19 g10800.t21 ProSitePatterns PS00223 Annexin repeat signature. 236 288 -
25 g10800.t21 ProSiteProfiles PS51897 Annexin repeat profile. 1 59 23.568
24 g10800.t21 ProSiteProfiles PS51897 Annexin repeat profile. 60 131 27.041
27 g10800.t21 ProSiteProfiles PS51897 Annexin repeat profile. 143 215 27.356
26 g10800.t21 ProSiteProfiles PS51897 Annexin repeat profile. 219 290 25.791
20 g10800.t21 SMART SM00335 annex3 5 57 4.1E-22
22 g10800.t21 SMART SM00335 annex3 77 129 3.3E-21
21 g10800.t21 SMART SM00335 annex3 161 213 5.4E-20
23 g10800.t21 SMART SM00335 annex3 236 288 1.6E-18
13 g10800.t21 SUPERFAMILY SSF47874 Annexin 1 290 4.84E-111

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values