General information for g10800.t22
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Annexin B9.
Parent gene
- The parent gene g10800 is located on chr_1: 12053250..12057223 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10800 | g10800.t22 | TTS | g10800.t22 | 12050020 | 12050020 |
| chr_1 | g10800 | g10800.t22 | isoform | g10800.t22 | 12050198 | 12054207 |
| chr_1 | g10800 | g10800.t22 | exon | g10800.t22.exon1 | 12050198 | 12050710 |
| chr_1 | g10800 | g10800.t22 | cds | g10800.t22.CDS1 | 12050657 | 12050710 |
| chr_1 | g10800 | g10800.t22 | exon | g10800.t22.exon2 | 12052686 | 12052867 |
| chr_1 | g10800 | g10800.t22 | cds | g10800.t22.CDS2 | 12052686 | 12052867 |
| chr_1 | g10800 | g10800.t22 | exon | g10800.t22.exon3 | 12052960 | 12053108 |
| chr_1 | g10800 | g10800.t22 | cds | g10800.t22.CDS3 | 12052960 | 12053108 |
| chr_1 | g10800 | g10800.t22 | exon | g10800.t22.exon4 | 12053171 | 12053303 |
| chr_1 | g10800 | g10800.t22 | cds | g10800.t22.CDS4 | 12053171 | 12053303 |
| chr_1 | g10800 | g10800.t22 | exon | g10800.t22.exon5 | 12053380 | 12053508 |
| chr_1 | g10800 | g10800.t22 | cds | g10800.t22.CDS5 | 12053380 | 12053508 |
| chr_1 | g10800 | g10800.t22 | exon | g10800.t22.exon6 | 12053572 | 12053869 |
| chr_1 | g10800 | g10800.t22 | cds | g10800.t22.CDS6 | 12053572 | 12053869 |
| chr_1 | g10800 | g10800.t22 | exon | g10800.t22.exon7 | 12054193 | 12054207 |
| chr_1 | g10800 | g10800.t22 | cds | g10800.t22.CDS7 | 12054193 | 12054207 |
| chr_1 | g10800 | g10800.t22 | TSS | g10800.t22 | 12054437 | 12054437 |
Sequences
>g10800.t22 Gene=g10800 Length=1419
ATGAGTAAAAGAACGTGCAAACCAACCGTTTACCCTGCCGATCCTTTTGACCCAAATGAA
GATGCAGGTATCTTGAGAAAGGCAATGAAAGGATTTGGAACTGATGAAAAGGCAATTATT
GAAGTGCTTGCTCGTCGTGGAATTGTTCAACGTCTTGAGATTGCTTCGGCATATAAGACC
AACTTTGGCAAGGATTTGATTAATGATTTGAAAAGTGAACTTGGTGGCAAGTTTGAAGAT
GTCATTCTTGCTTTGATGACTCCTTTGCCGCAATTCTATGCAAAGGAATTGCATGATGCA
ATTTCCGGCATTGGAACTGACGAAGACGCTATCATCGAAATTCTCTGCACACTCTCCAAC
TATGGCATTCGTACAATTGCAGAATTCTACGAACAACTGTATGGAAATTCACTCGAAAGC
GACTTGAAGGGAGACACCTCAGGATTCTTTAAGCGTTTATGCGTATCATTAGTGCAAGGC
AATCGCGATGAAAACAATGGTGTTGATCAAGGTTCTGCTCTTGCTGATGCTACTGCACTT
TATGAAGCCGGTGAAGGACAATGGGGCACTGATGAGTCAGTTTTCAATCAAATTCTTGTA
ACCAGATCATACCAACAATTGAGACAAGTCTTTTTGGAATATGAGGCTATGAGCGGCCAC
GACATTGAAAAAGCTATCAAGCGTGAATTCTCAGGAAACGCTGAAAAAGGATTCCTCGCA
ATCGCCAAGGTTGTCAAATCAAAGGTTGATTTCTTTGCTGAAAAACTCTACGAGAGCATG
AAGGGCTTAGGTACGAATGACAAGACATTGATTCGTATCATTGTTTCACGCTCAGAAATT
GATTTGGGTGACATCAAAGAAGCATTTGAAGCCAAGTATGGAAAAAGCCTCGAGAGCTGG
GTTAAGGAAGATTGTGGTGGCGATCTAGGTGAATTGTTGGCCGAGCTGTGCGCATACTAA
GACATCGATAAAATCAAAAAAAGCGTAATGCAATGCTATGCAGATAAAAATGTTCGATGT
GTATCAATTTTGAATGACACATAAATTTTTACCAATAATTTTTGAATATTAATCTATGAA
TGTATTTTTATTAAGTTATTTTTTACCTTCATGTATTCAATGCACATCTTTCCCTGTGAG
TTGATAAATTTTTACATATGTAGAATTCTAAATAGAAAGAAAGAGAATTGTGCTTTAACA
TAATATATACCTTTCTTAACTATCCTTGTATTGTGTGTGTACTATTTCCTTTAATATCTG
ATAATGACATAAAAGATTTTTTGGGGAAATGTCATAAAGTTATAAAATCCATACAACAAT
CATAATTTACTTAAAATTTAATTTTCAATAAATTCAATTTCACAGGATGAACTATCGAGT
GATTATGAGCGAGTTATGGTTTGCCTTCTTGGATCTTAA
>g10800.t22 Gene=g10800 Length=319
MSKRTCKPTVYPADPFDPNEDAGILRKAMKGFGTDEKAIIEVLARRGIVQRLEIASAYKT
NFGKDLINDLKSELGGKFEDVILALMTPLPQFYAKELHDAISGIGTDEDAIIEILCTLSN
YGIRTIAEFYEQLYGNSLESDLKGDTSGFFKRLCVSLVQGNRDENNGVDQGSALADATAL
YEAGEGQWGTDESVFNQILVTRSYQQLRQVFLEYEAMSGHDIEKAIKREFSGNAEKGFLA
IAKVVKSKVDFFAEKLYESMKGLGTNDKTLIRIIVSRSEIDLGDIKEAFEAKYGKSLESW
VKEDCGGDLGELLAELCAY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 17 | g10800.t22 | Gene3D | G3DSA:1.10.220.10 | - | 15 | 87 | 1.3E-27 |
| 16 | g10800.t22 | Gene3D | G3DSA:1.10.220.10 | - | 89 | 160 | 6.7E-26 |
| 15 | g10800.t22 | Gene3D | G3DSA:1.10.220.10 | - | 161 | 247 | 2.8E-30 |
| 14 | g10800.t22 | Gene3D | G3DSA:1.10.220.10 | - | 249 | 318 | 1.5E-24 |
| 5 | g10800.t22 | PANTHER | PTHR10502 | ANNEXIN | 4 | 316 | 4.7E-141 |
| 6 | g10800.t22 | PANTHER | PTHR10502:SF212 | ANNEXIN B9 | 4 | 316 | 4.7E-141 |
| 12 | g10800.t22 | PRINTS | PR00196 | Annexin family signature | 30 | 52 | 1.1E-54 |
| 7 | g10800.t22 | PRINTS | PR00196 | Annexin family signature | 70 | 86 | 1.1E-54 |
| 8 | g10800.t22 | PRINTS | PR00196 | Annexin family signature | 97 | 118 | 1.1E-54 |
| 11 | g10800.t22 | PRINTS | PR00196 | Annexin family signature | 180 | 206 | 1.1E-54 |
| 9 | g10800.t22 | PRINTS | PR00196 | Annexin family signature | 260 | 280 | 1.1E-54 |
| 10 | g10800.t22 | PRINTS | PR00196 | Annexin family signature | 304 | 317 | 1.1E-54 |
| 4 | g10800.t22 | Pfam | PF00191 | Annexin | 21 | 85 | 2.2E-22 |
| 2 | g10800.t22 | Pfam | PF00191 | Annexin | 93 | 157 | 2.4E-22 |
| 1 | g10800.t22 | Pfam | PF00191 | Annexin | 176 | 241 | 1.6E-23 |
| 3 | g10800.t22 | Pfam | PF00191 | Annexin | 251 | 314 | 2.2E-21 |
| 18 | g10800.t22 | ProSitePatterns | PS00223 | Annexin repeat signature. | 33 | 85 | - |
| 19 | g10800.t22 | ProSitePatterns | PS00223 | Annexin repeat signature. | 264 | 316 | - |
| 26 | g10800.t22 | ProSiteProfiles | PS51897 | Annexin repeat profile. | 16 | 87 | 26.995 |
| 25 | g10800.t22 | ProSiteProfiles | PS51897 | Annexin repeat profile. | 88 | 159 | 27.041 |
| 27 | g10800.t22 | ProSiteProfiles | PS51897 | Annexin repeat profile. | 171 | 243 | 27.356 |
| 24 | g10800.t22 | ProSiteProfiles | PS51897 | Annexin repeat profile. | 247 | 318 | 25.791 |
| 20 | g10800.t22 | SMART | SM00335 | annex3 | 33 | 85 | 4.1E-22 |
| 23 | g10800.t22 | SMART | SM00335 | annex3 | 105 | 157 | 3.3E-21 |
| 22 | g10800.t22 | SMART | SM00335 | annex3 | 189 | 241 | 5.4E-20 |
| 21 | g10800.t22 | SMART | SM00335 | annex3 | 264 | 316 | 1.6E-18 |
| 13 | g10800.t22 | SUPERFAMILY | SSF47874 | Annexin | 6 | 318 | 2.88E-119 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005544 | calcium-dependent phospholipid binding | MF |
| GO:0005509 | calcium ion binding | MF |
KEGG
Orthology
- This transcript has been annotated with K17095 (annexin A7/11)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed