Gene loci information

Transcript annotation

  • This transcript has been annotated as Annexin B9.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10800 g10800.t23 TTS g10800.t23 12050020 12050020
chr_1 g10800 g10800.t23 isoform g10800.t23 12050198 12055390
chr_1 g10800 g10800.t23 exon g10800.t23.exon1 12050198 12050251
chr_1 g10800 g10800.t23 cds g10800.t23.CDS1 12050198 12050251
chr_1 g10800 g10800.t23 exon g10800.t23.exon2 12052686 12052867
chr_1 g10800 g10800.t23 cds g10800.t23.CDS2 12052686 12052867
chr_1 g10800 g10800.t23 exon g10800.t23.exon3 12052960 12053108
chr_1 g10800 g10800.t23 cds g10800.t23.CDS3 12052960 12053108
chr_1 g10800 g10800.t23 exon g10800.t23.exon4 12053171 12053303
chr_1 g10800 g10800.t23 cds g10800.t23.CDS4 12053171 12053303
chr_1 g10800 g10800.t23 exon g10800.t23.exon5 12053380 12053508
chr_1 g10800 g10800.t23 cds g10800.t23.CDS5 12053380 12053508
chr_1 g10800 g10800.t23 exon g10800.t23.exon6 12053572 12053869
chr_1 g10800 g10800.t23 cds g10800.t23.CDS6 12053572 12053800
chr_1 g10800 g10800.t23 exon g10800.t23.exon7 12055371 12055390
chr_1 g10800 g10800.t23 TSS g10800.t23 12055446 12055446

Sequences

>g10800.t23 Gene=g10800 Length=965
CAAGTAAGTAATTAGTATCATGCAAACCAACCGTTTACCCTGCCGATCCTTTTGACCCAA
ATGAAGATGCAGGTATCTTGAGAAAGGCAATGAAAGGATTTGGAACTGATGAAAAGGCAA
TTATTGAAGTGCTTGCTCGTCGTGGAATTGTTCAACGTCTTGAGATTGCTTCGGCATATA
AGACCAACTTTGGCAAGGATTTGATTAATGATTTGAAAAGTGAACTTGGTGGCAAGTTTG
AAGATGTCATTCTTGCTTTGATGACTCCTTTGCCGCAATTCTATGCAAAGGAATTGCATG
ATGCAATTTCCGGCATTGGAACTGACGAAGACGCTATCATCGAAATTCTCTGCACACTCT
CCAACTATGGCATTCGTACAATTGCAGAATTCTACGAACAACTGTATGGAAATTCACTCG
AAAGCGACTTGAAGGGAGACACCTCAGGATTCTTTAAGCGTTTATGCGTATCATTAGTGC
AAGGCAATCGCGATGAAAACAATGGTGTTGATCAAGGTTCTGCTCTTGCTGATGCTACTG
CACTTTATGAAGCCGGTGAAGGACAATGGGGCACTGATGAGTCAGTTTTCAATCAAATTC
TTGTAACCAGATCATACCAACAATTGAGACAAGTCTTTTTGGAATATGAGGCTATGAGCG
GCCACGACATTGAAAAAGCTATCAAGCGTGAATTCTCAGGAAACGCTGAAAAAGGATTCC
TCGCAATCGCCAAGGTTGTCAAATCAAAGGTTGATTTCTTTGCTGAAAAACTCTACGAGA
GCATGAAGGGCTTAGGTACGAATGACAAGACATTGATTCGTATCATTGTTTCACGCTCAG
AAATTGATTTGGGTGACATCAAAGAAGCATTTGAAGCCAAGTATGGAAAAAGCCTCGAGA
GCTGGGTTAAGGATGAACTATCGAGTGATTATGAGCGAGTTATGGTTTGCCTTCTTGGAT
CTTAA

>g10800.t23 Gene=g10800 Length=291
MKGFGTDEKAIIEVLARRGIVQRLEIASAYKTNFGKDLINDLKSELGGKFEDVILALMTP
LPQFYAKELHDAISGIGTDEDAIIEILCTLSNYGIRTIAEFYEQLYGNSLESDLKGDTSG
FFKRLCVSLVQGNRDENNGVDQGSALADATALYEAGEGQWGTDESVFNQILVTRSYQQLR
QVFLEYEAMSGHDIEKAIKREFSGNAEKGFLAIAKVVKSKVDFFAEKLYESMKGLGTNDK
TLIRIIVSRSEIDLGDIKEAFEAKYGKSLESWVKDELSSDYERVMVCLLGS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g10800.t23 Gene3D G3DSA:1.10.220.10 - 1 59 2.1E-21
16 g10800.t23 Gene3D G3DSA:1.10.220.10 - 61 132 5.7E-26
15 g10800.t23 Gene3D G3DSA:1.10.220.10 - 133 219 2.3E-30
17 g10800.t23 Gene3D G3DSA:1.10.220.10 - 221 291 4.3E-26
5 g10800.t23 PANTHER PTHR10502 ANNEXIN 1 289 7.6E-130
6 g10800.t23 PANTHER PTHR10502:SF212 ANNEXIN B9 1 289 7.6E-130
11 g10800.t23 PRINTS PR00196 Annexin family signature 2 24 1.8E-56
10 g10800.t23 PRINTS PR00196 Annexin family signature 42 58 1.8E-56
12 g10800.t23 PRINTS PR00196 Annexin family signature 69 90 1.8E-56
8 g10800.t23 PRINTS PR00196 Annexin family signature 152 178 1.8E-56
9 g10800.t23 PRINTS PR00196 Annexin family signature 232 252 1.8E-56
7 g10800.t23 PRINTS PR00196 Annexin family signature 260 275 1.8E-56
4 g10800.t23 Pfam PF00191 Annexin 1 57 2.0E-18
1 g10800.t23 Pfam PF00191 Annexin 65 129 2.0E-22
3 g10800.t23 Pfam PF00191 Annexin 148 213 1.4E-23
2 g10800.t23 Pfam PF00191 Annexin 223 288 4.2E-23
18 g10800.t23 ProSitePatterns PS00223 Annexin repeat signature. 5 57 -
19 g10800.t23 ProSitePatterns PS00223 Annexin repeat signature. 236 288 -
25 g10800.t23 ProSiteProfiles PS51897 Annexin repeat profile. 1 59 23.568
24 g10800.t23 ProSiteProfiles PS51897 Annexin repeat profile. 60 131 27.041
27 g10800.t23 ProSiteProfiles PS51897 Annexin repeat profile. 143 215 27.356
26 g10800.t23 ProSiteProfiles PS51897 Annexin repeat profile. 219 290 27.946
20 g10800.t23 SMART SM00335 annex3 5 57 4.1E-22
22 g10800.t23 SMART SM00335 annex3 77 129 3.3E-21
21 g10800.t23 SMART SM00335 annex3 161 213 5.4E-20
23 g10800.t23 SMART SM00335 annex3 236 288 6.2E-23
13 g10800.t23 SUPERFAMILY SSF47874 Annexin 1 290 1.57E-111

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values