Gene loci information

Transcript annotation

  • This transcript has been annotated as Annexin B9.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10800 g10800.t27 TTS g10800.t27 12050020 12050020
chr_1 g10800 g10800.t27 isoform g10800.t27 12050198 12057143
chr_1 g10800 g10800.t27 exon g10800.t27.exon1 12050198 12051144
chr_1 g10800 g10800.t27 exon g10800.t27.exon2 12052686 12052862
chr_1 g10800 g10800.t27 cds g10800.t27.CDS1 12052843 12052862
chr_1 g10800 g10800.t27 exon g10800.t27.exon3 12052960 12053108
chr_1 g10800 g10800.t27 cds g10800.t27.CDS2 12052960 12053108
chr_1 g10800 g10800.t27 exon g10800.t27.exon4 12053171 12053303
chr_1 g10800 g10800.t27 cds g10800.t27.CDS3 12053171 12053303
chr_1 g10800 g10800.t27 exon g10800.t27.exon5 12053380 12053508
chr_1 g10800 g10800.t27 cds g10800.t27.CDS4 12053380 12053508
chr_1 g10800 g10800.t27 exon g10800.t27.exon6 12053572 12053869
chr_1 g10800 g10800.t27 cds g10800.t27.CDS5 12053572 12053869
chr_1 g10800 g10800.t27 exon g10800.t27.exon7 12055388 12055446
chr_1 g10800 g10800.t27 cds g10800.t27.CDS6 12055388 12055417
chr_1 g10800 g10800.t27 exon g10800.t27.exon8 12057132 12057143
chr_1 g10800 g10800.t27 TSS g10800.t27 12057215 12057215

Sequences

>g10800.t27 Gene=g10800 Length=1904
ATTTATCTTAAAAGTCGTATTAATTGTAAAGAGCAGCGAAAATGAGTTCAGCAGCCTACT
ATCCATTCCAATGCAAACCAACCGTTTACCCTGCCGATCCTTTTGACCCAAATGAAGATG
CAGGTATCTTGAGAAAGGCAATGAAAGGATTTGGAACTGATGAAAAGGCAATTATTGAAG
TGCTTGCTCGTCGTGGAATTGTTCAACGTCTTGAGATTGCTTCGGCATATAAGACCAACT
TTGGCAAGGATTTGATTAATGATTTGAAAAGTGAACTTGGTGGCAAGTTTGAAGATGTCA
TTCTTGCTTTGATGACTCCTTTGCCGCAATTCTATGCAAAGGAATTGCATGATGCAATTT
CCGGCATTGGAACTGACGAAGACGCTATCATCGAAATTCTCTGCACACTCTCCAACTATG
GCATTCGTACAATTGCAGAATTCTACGAACAACTGTATGGAAATTCACTCGAAAGCGACT
TGAAGGGAGACACCTCAGGATTCTTTAAGCGTTTATGCGTATCATTAGTGCAAGGCAATC
GCGATGAAAACAATGGTGTTGATCAAGGTTCTGCTCTTGCTGATGCTACTGCACTTTATG
AAGCCGGTGAAGGACAATGGGGCACTGATGAGTCAGTTTTCAATCAAATTCTTGTAACCA
GATCATACCAACAATTGAGACAAGTCTTTTTGGAATATGAGGCTATGAGCGGCCACGACA
TTGAAAAAGCTATCAAGCGTGAATTCTCAGGAAACGCTGAAAAAGGATTCCTCGCAATCG
GTTGTCAAATCAAAGGTTGATTTCTTTGCTGAAAAACTCTACGAGAGCATGAAGGGCTTA
GGTACGAATGACAAGACATTGATTCGTATCATTGTTTCACGCTCAGAAATTGATTTGGGT
GACATCAAAGAAGCATTTGAAGCCAAGTATGGAAAAAGCCTCGAGAGCTGGGTTAAGGAT
GAGCTAAACTCTGAAATTGGACTCTTATTGTATAATCTTGTTGCATATTAAAAACGATAC
TTAAAAGCTTTGCAACATGGGCTTCTACATTTTCCTTCTTTTGATTTTTTTATCATAAAA
TGAGTTTCAATTAATTATTTTCTTTTATTATTAATATTTTTTCATAATTTTTTTTGTTAA
CCAGATAAGATATTGGAGAGTTACTTTCATAGATGCATGCATTATGTTATGCTTTTTTTG
AGATTTAGTTTTTGAATCAAAGTAGATAAATTAAATTTTGGGAAAAGCAATTCTCTTTAT
GTTTCATGTAAAAATTTATAATTTCTTTTCGGCACAAGAATTTCCACTAAAAAGATTATG
CGTTCTTTTAATTTAAATTCCTTCTCAATTATTTCTTATTTTATCATTTTTTATTTGGGA
AATGATAATAGGAAGATTGTGGTGGCGATCTAGGTGAATTGTTGGCCGAGCTGTGCGCAT
ACTAAGACATCGATAAAATCAAAAAAAGCGTAATGCAATGCTATGCAGATAAAAATGTTC
GATGTGTATCAATTTTGAATGACACATAAATTTTTACCAATAATTTTTGAATATTAATCT
ATGAATGTATTTTTATTAAGTTATTTTTTACCTTCATGTATTCAATGCACATCTTTCCCT
GTGAGTTGATAAATTTTTACATATGTAGAATTCTAAATAGAAAGAAAGAGAATTGTGCTT
TAACATAATATATACCTTTCTTAACTATCCTTGTATTGTGTGTGTACTATTTCCTTTAAT
ATCTGATAATGACATAAAAGATTTTTTGGGGAAATGTCATAAAGTTATAAAATCCATACA
ACAATCATAATTTACTTAAAATTTAATTTTCAATAAATTCAATTTCACAGGATGAACTAT
CGAGTGATTATGAGCGAGTTATGGTTTGCCTTCTTGGATCTTAA

>g10800.t27 Gene=g10800 Length=252
MSSAAYYPFQCKPTVYPADPFDPNEDAGILRKAMKGFGTDEKAIIEVLARRGIVQRLEIA
SAYKTNFGKDLINDLKSELGGKFEDVILALMTPLPQFYAKELHDAISGIGTDEDAIIEIL
CTLSNYGIRTIAEFYEQLYGNSLESDLKGDTSGFFKRLCVSLVQGNRDENNGVDQGSALA
DATALYEAGEGQWGTDESVFNQILVTRSYQQLRQVFLEYEAMSGHDIEKAIKREFSGNAE
KGFLAIGCQIKG

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g10800.t27 Gene3D G3DSA:1.10.220.10 - 20 92 8.5E-28
11 g10800.t27 Gene3D G3DSA:1.10.220.10 - 94 166 4.4E-26
12 g10800.t27 Gene3D G3DSA:1.10.220.10 - 167 249 2.5E-29
4 g10800.t27 PANTHER PTHR10502 ANNEXIN 7 246 2.9E-100
5 g10800.t27 PANTHER PTHR10502:SF212 ANNEXIN B9 7 246 2.9E-100
9 g10800.t27 PRINTS PR00196 Annexin family signature 35 57 6.2E-38
6 g10800.t27 PRINTS PR00196 Annexin family signature 75 91 6.2E-38
8 g10800.t27 PRINTS PR00196 Annexin family signature 102 123 6.2E-38
7 g10800.t27 PRINTS PR00196 Annexin family signature 185 211 6.2E-38
3 g10800.t27 Pfam PF00191 Annexin 26 90 1.5E-22
1 g10800.t27 Pfam PF00191 Annexin 98 162 1.6E-22
2 g10800.t27 Pfam PF00191 Annexin 181 246 1.1E-23
14 g10800.t27 ProSitePatterns PS00223 Annexin repeat signature. 38 90 -
15 g10800.t27 ProSitePatterns PS00223 Annexin repeat signature. 194 246 -
21 g10800.t27 ProSiteProfiles PS51897 Annexin repeat profile. 21 92 26.995
20 g10800.t27 ProSiteProfiles PS51897 Annexin repeat profile. 93 164 27.041
19 g10800.t27 ProSiteProfiles PS51897 Annexin repeat profile. 176 248 24.894
17 g10800.t27 SMART SM00335 annex3 38 90 4.1E-22
16 g10800.t27 SMART SM00335 annex3 110 162 3.3E-21
18 g10800.t27 SMART SM00335 annex3 194 246 5.4E-20
10 g10800.t27 SUPERFAMILY SSF47874 Annexin 6 246 3.01E-90

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values