General information for g10800.t29
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Annexin B9.
Parent gene
- The parent gene g10800 is located on chr_1: 12053250..12057223 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10800 | g10800.t29 | TTS | g10800.t29 | 12050020 | 12050020 |
| chr_1 | g10800 | g10800.t29 | isoform | g10800.t29 | 12050198 | 12057153 |
| chr_1 | g10800 | g10800.t29 | exon | g10800.t29.exon1 | 12050198 | 12050251 |
| chr_1 | g10800 | g10800.t29 | cds | g10800.t29.CDS1 | 12050198 | 12050251 |
| chr_1 | g10800 | g10800.t29 | exon | g10800.t29.exon2 | 12052686 | 12052867 |
| chr_1 | g10800 | g10800.t29 | cds | g10800.t29.CDS2 | 12052686 | 12052867 |
| chr_1 | g10800 | g10800.t29 | exon | g10800.t29.exon3 | 12052960 | 12053108 |
| chr_1 | g10800 | g10800.t29 | cds | g10800.t29.CDS3 | 12052960 | 12053108 |
| chr_1 | g10800 | g10800.t29 | exon | g10800.t29.exon4 | 12053171 | 12053303 |
| chr_1 | g10800 | g10800.t29 | cds | g10800.t29.CDS4 | 12053171 | 12053303 |
| chr_1 | g10800 | g10800.t29 | exon | g10800.t29.exon5 | 12053380 | 12053508 |
| chr_1 | g10800 | g10800.t29 | cds | g10800.t29.CDS5 | 12053380 | 12053508 |
| chr_1 | g10800 | g10800.t29 | exon | g10800.t29.exon6 | 12053572 | 12053869 |
| chr_1 | g10800 | g10800.t29 | cds | g10800.t29.CDS6 | 12053572 | 12053800 |
| chr_1 | g10800 | g10800.t29 | exon | g10800.t29.exon7 | 12057095 | 12057153 |
| chr_1 | g10800 | g10800.t29 | TSS | g10800.t29 | 12057215 | 12057215 |
Sequences
>g10800.t29 Gene=g10800 Length=1004
TAAAAGTTAAATTTATCTTAAAGTAAGTATATAAAAGTGACATTTCATTGTTGTATTTAT
GCAAACCAACCGTTTACCCTGCCGATCCTTTTGACCCAAATGAAGATGCAGGTATCTTGA
GAAAGGCAATGAAAGGATTTGGAACTGATGAAAAGGCAATTATTGAAGTGCTTGCTCGTC
GTGGAATTGTTCAACGTCTTGAGATTGCTTCGGCATATAAGACCAACTTTGGCAAGGATT
TGATTAATGATTTGAAAAGTGAACTTGGTGGCAAGTTTGAAGATGTCATTCTTGCTTTGA
TGACTCCTTTGCCGCAATTCTATGCAAAGGAATTGCATGATGCAATTTCCGGCATTGGAA
CTGACGAAGACGCTATCATCGAAATTCTCTGCACACTCTCCAACTATGGCATTCGTACAA
TTGCAGAATTCTACGAACAACTGTATGGAAATTCACTCGAAAGCGACTTGAAGGGAGACA
CCTCAGGATTCTTTAAGCGTTTATGCGTATCATTAGTGCAAGGCAATCGCGATGAAAACA
ATGGTGTTGATCAAGGTTCTGCTCTTGCTGATGCTACTGCACTTTATGAAGCCGGTGAAG
GACAATGGGGCACTGATGAGTCAGTTTTCAATCAAATTCTTGTAACCAGATCATACCAAC
AATTGAGACAAGTCTTTTTGGAATATGAGGCTATGAGCGGCCACGACATTGAAAAAGCTA
TCAAGCGTGAATTCTCAGGAAACGCTGAAAAAGGATTCCTCGCAATCGCCAAGGTTGTCA
AATCAAAGGTTGATTTCTTTGCTGAAAAACTCTACGAGAGCATGAAGGGCTTAGGTACGA
ATGACAAGACATTGATTCGTATCATTGTTTCACGCTCAGAAATTGATTTGGGTGACATCA
AAGAAGCATTTGAAGCCAAGTATGGAAAAAGCCTCGAGAGCTGGGTTAAGGATGAACTAT
CGAGTGATTATGAGCGAGTTATGGTTTGCCTTCTTGGATCTTAA
>g10800.t29 Gene=g10800 Length=291
MKGFGTDEKAIIEVLARRGIVQRLEIASAYKTNFGKDLINDLKSELGGKFEDVILALMTP
LPQFYAKELHDAISGIGTDEDAIIEILCTLSNYGIRTIAEFYEQLYGNSLESDLKGDTSG
FFKRLCVSLVQGNRDENNGVDQGSALADATALYEAGEGQWGTDESVFNQILVTRSYQQLR
QVFLEYEAMSGHDIEKAIKREFSGNAEKGFLAIAKVVKSKVDFFAEKLYESMKGLGTNDK
TLIRIIVSRSEIDLGDIKEAFEAKYGKSLESWVKDELSSDYERVMVCLLGS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 14 | g10800.t29 | Gene3D | G3DSA:1.10.220.10 | - | 1 | 59 | 2.1E-21 |
| 16 | g10800.t29 | Gene3D | G3DSA:1.10.220.10 | - | 61 | 132 | 5.7E-26 |
| 15 | g10800.t29 | Gene3D | G3DSA:1.10.220.10 | - | 133 | 219 | 2.3E-30 |
| 17 | g10800.t29 | Gene3D | G3DSA:1.10.220.10 | - | 221 | 291 | 4.3E-26 |
| 5 | g10800.t29 | PANTHER | PTHR10502 | ANNEXIN | 1 | 289 | 7.6E-130 |
| 6 | g10800.t29 | PANTHER | PTHR10502:SF212 | ANNEXIN B9 | 1 | 289 | 7.6E-130 |
| 11 | g10800.t29 | PRINTS | PR00196 | Annexin family signature | 2 | 24 | 1.8E-56 |
| 10 | g10800.t29 | PRINTS | PR00196 | Annexin family signature | 42 | 58 | 1.8E-56 |
| 12 | g10800.t29 | PRINTS | PR00196 | Annexin family signature | 69 | 90 | 1.8E-56 |
| 8 | g10800.t29 | PRINTS | PR00196 | Annexin family signature | 152 | 178 | 1.8E-56 |
| 9 | g10800.t29 | PRINTS | PR00196 | Annexin family signature | 232 | 252 | 1.8E-56 |
| 7 | g10800.t29 | PRINTS | PR00196 | Annexin family signature | 260 | 275 | 1.8E-56 |
| 4 | g10800.t29 | Pfam | PF00191 | Annexin | 1 | 57 | 2.0E-18 |
| 1 | g10800.t29 | Pfam | PF00191 | Annexin | 65 | 129 | 2.0E-22 |
| 3 | g10800.t29 | Pfam | PF00191 | Annexin | 148 | 213 | 1.4E-23 |
| 2 | g10800.t29 | Pfam | PF00191 | Annexin | 223 | 288 | 4.2E-23 |
| 18 | g10800.t29 | ProSitePatterns | PS00223 | Annexin repeat signature. | 5 | 57 | - |
| 19 | g10800.t29 | ProSitePatterns | PS00223 | Annexin repeat signature. | 236 | 288 | - |
| 25 | g10800.t29 | ProSiteProfiles | PS51897 | Annexin repeat profile. | 1 | 59 | 23.568 |
| 24 | g10800.t29 | ProSiteProfiles | PS51897 | Annexin repeat profile. | 60 | 131 | 27.041 |
| 27 | g10800.t29 | ProSiteProfiles | PS51897 | Annexin repeat profile. | 143 | 215 | 27.356 |
| 26 | g10800.t29 | ProSiteProfiles | PS51897 | Annexin repeat profile. | 219 | 290 | 27.946 |
| 20 | g10800.t29 | SMART | SM00335 | annex3 | 5 | 57 | 4.1E-22 |
| 22 | g10800.t29 | SMART | SM00335 | annex3 | 77 | 129 | 3.3E-21 |
| 21 | g10800.t29 | SMART | SM00335 | annex3 | 161 | 213 | 5.4E-20 |
| 23 | g10800.t29 | SMART | SM00335 | annex3 | 236 | 288 | 6.2E-23 |
| 13 | g10800.t29 | SUPERFAMILY | SSF47874 | Annexin | 1 | 290 | 1.57E-111 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005544 | calcium-dependent phospholipid binding | MF |
| GO:0005509 | calcium ion binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed